Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0405
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420           31   0.88 
10_08_0912 - 21520088-21520426,21520534-21520674,21521235-215212...    29   4.7  

>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
          Length = 1407

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 109  DKSIADNVFSSYDGCIQKKFCEVRSNVQLRIGFKT 213
            DK I D        CI K   E  SNVQ  IG+KT
Sbjct: 1069 DKEILDTCCEGISECIVKLLMEYASNVQTPIGWKT 1103


>10_08_0912 -
           21520088-21520426,21520534-21520674,21521235-21521294,
           21521394-21521493,21521591-21521904,21522253-21522621,
           21522993-21523104,21523627-21523787
          Length = 531

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 8   VLQFQFYSS*KRKLRVSPTDRVLSTLSRHSCILKTKVLQTMFSAPTMDVYKRNF 169
           ++   F SS K  L+       +S   R   +LKTK+    FS+ T+D++   F
Sbjct: 155 IISSAFCSSKKLPLQPFQIMTSVSESGRSKSMLKTKIKHESFSSETLDIHPATF 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,400
Number of Sequences: 37544
Number of extensions: 374645
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)