Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0405
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z82085-1|CAB04984.1|  245|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 565 TDTGALPPSATHPETSCLRLSRPSNLNTSYPYGLTRRPTTSEP 693
           T++   PP+AT P+TS   +S  S  +TS P   T  PTTS P
Sbjct: 259 TNSTTNPPTATSPKTSSQPVS-SSTSSTSSP-APTNPPTTSRP 299


>Z82085-1|CAB04984.1|  245|Caenorhabditis elegans Hypothetical
           protein ZK218.1 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -2

Query: 687 TCSRTSSEPVRVGCVQIRRSG 625
           TCSR SS PV  GC   R SG
Sbjct: 192 TCSRCSSAPVPGGCTYNRDSG 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,057,048
Number of Sequences: 27780
Number of extensions: 341511
Number of successful extensions: 708
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)