Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0405
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    26   0.40 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           26   0.40 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.5  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 296 MTQDWTRIRIWDFFFHFKYTIYLDTHLPVLKPIRNWTLE 180
           + ++W  I    +F  + YTI  + H+ V + IRN+  E
Sbjct: 360 LDENWDLIA--PYFLDYNYTIPKEKHVEVARLIRNYYFE 396


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 296 MTQDWTRIRIWDFFFHFKYTIYLDTHLPVLKPIRNWTLE 180
           + ++W  I    +F  + YTI  + H+ V + IRN+  E
Sbjct: 360 LDENWDLIA--PYFLDYNYTIPKEKHVEVARLIRNYYFE 396


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 147 IVGAENIVCNTFVFRMQECRLSVDKT 70
           +V + N +  +F+  +Q C LS++KT
Sbjct: 420 LVNSVNCLRESFIGTLQRCLLSLEKT 445


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 147 IVGAENIVCNTFVFRMQECRLSVDKT 70
           +V + N +  +F+  +Q C LS++KT
Sbjct: 458 LVNSVNCLRESFIGTLQRCLLSLEKT 483


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 231 INCVFEMKKKIPDSNPCPILSHRWPKSI 314
           +NC   ++K   D   CP++   W  ++
Sbjct: 140 LNCGLRLEKFPFDVQECPLIFESWTHNV 167


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +1

Query: 100 HSEDKSIADNVFSSYDGCIQKKFCEVRSNVQLRI 201
           HS    + DN+   YD  ++  F    + V++ I
Sbjct: 3   HSNISELLDNLLRGYDNSVRPDFGGPPATVEVDI 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,546
Number of Sequences: 438
Number of extensions: 4044
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)