Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0405
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase fam...    30   1.7  
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored...    28   6.8  
At5g06530.2 68418.m00737 ABC transporter family protein                27   9.0  
At5g06530.1 68418.m00736 ABC transporter family protein                27   9.0  
At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subun...    27   9.0  

>At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase family
           protein similar to SP|Q92535 Phosphatidylinositol-glycan
           biosynthesis, class C protein (PIG-C) {Homo sapiens}
          Length = 303

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 255 FSFQIHNLS*HPSAGLETYT*LDIRTDLTKFLLYTSIVGAENIVCNTFVFRMQECRLSVD 76
           F+F +H L      GL  Y+   +      FL++ S+V   N+VC  ++ RMQE +  ++
Sbjct: 232 FNFGLHLLFSFALMGLTLYSIYALHRLF--FLVFLSLVLLVNVVCPYWLIRMQEYKFEIN 289


>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 594

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 37  EKKITSLAYRPSFIDA*STFLHSEDKSIADN-VFSSYD 147
           EKK     YR +FID  STF  S   S + N   SSYD
Sbjct: 27  EKKSKFNPYRYTFIDKASTFSSSSSSSFSSNGQDSSYD 64


>At5g06530.2 68418.m00737 ABC transporter family protein
          Length = 691

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 47  LRVSPTDRVLSTLSRHSCILKTKVLQTMFSAPTMDVYKRNFVRSVLMSSYV 199
           LR+SP    LS L+   CI+  + L     A  MD+ K   + SV + +++
Sbjct: 622 LRISPYPFFLSMLTVFLCIIAAQGLGLAIGAILMDLKKATTLASVTVMTFM 672


>At5g06530.1 68418.m00736 ABC transporter family protein
          Length = 751

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 47  LRVSPTDRVLSTLSRHSCILKTKVLQTMFSAPTMDVYKRNFVRSVLMSSYV 199
           LR+SP    LS L+   CI+  + L     A  MD+ K   + SV + +++
Sbjct: 622 LRISPYPFFLSMLTVFLCIIAAQGLGLAIGAILMDLKKATTLASVTVMTFM 672


>At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subunit
           family protein contains InterPro accession IPR000722:
           RNA polymerase, alpha subunit
          Length = 888

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 130 HCLQYFCLQNARMSTKRR*NSVGRRDS*FSFL 35
           HC + FC +NA  + + + N V  +D+   FL
Sbjct: 836 HCGKRFCQENAACTVRNKLNKVSLKDTAVEFL 867


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,219
Number of Sequences: 28952
Number of extensions: 309984
Number of successful extensions: 570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)