Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0402
         (507 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0QJ94 Cluster: Cytochrome c oxidase subunit 3; n=1; Xe...    37   0.23 
UniRef50_P54745 Cluster: Heat-responsive suppressor hrsA (Putati...    33   4.9  
UniRef50_UPI0000F1F518 Cluster: PREDICTED: hypothetical protein;...    32   8.6  
UniRef50_Q82SB9 Cluster: Pyrimidine dimer DNA glycosylase; n=8; ...    32   8.6  
UniRef50_A0UZ43 Cluster: Periplasmic sensor signal transduction ...    32   8.6  

>UniRef50_Q0QJ94 Cluster: Cytochrome c oxidase subunit 3; n=1; Xenos
           vesparum|Rep: Cytochrome c oxidase subunit 3 - Xenos
           vesparum
          Length = 251

 Score = 37.1 bits (82), Expect = 0.23
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = -3

Query: 307 LLRHTLKTQILLISLADTENIVSFFWYLYI*QKLGYTMVWNVKRIKFVLGYFVYYLPLRS 128
           L+   LK  +++    +     S  W  +  +KL Y M+W  K   F+L    Y++PL +
Sbjct: 72  LIYQNLKMAMIMFIFTEILLFTSLLWNFFYMKKLNYDMMWPPK---FLLMINPYHIPLLN 128

Query: 127 TTISIQSHITL 95
           T I   S IT+
Sbjct: 129 TLILFSSSITI 139


>UniRef50_P54745 Cluster: Heat-responsive suppressor hrsA (Putative
           PTS system EIIABC component) [Includes:
           Phosphotransferase enzyme IIA component (EC 2.7.1.-)
           (PTS system EIIA component); Phosphotransferase enzyme
           IIB component (EC 2.7.1.69) (PTS system EIIB component);
           Permease IIC component (PTS system EIIC component)];
           n=19; Bacteria|Rep: Heat-responsive suppressor hrsA
           (Putative PTS system EIIABC component) [Includes:
           Phosphotransferase enzyme IIA component (EC 2.7.1.-)
           (PTS system EIIA component); Phosphotransferase enzyme
           IIB component (EC 2.7.1.69) (PTS system EIIB component);
           Permease IIC component (PTS system EIIC component)] -
           Escherichia coli (strain K12)
          Length = 658

 Score = 32.7 bits (71), Expect = 4.9
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 336 LLSDIIGITALYNKENKYDYVWTRLANDVLGVL 434
           LLS I G+  L+N+EN + +++ +L   +LG+L
Sbjct: 333 LLSQIFGLQDLFNEENSWLWMYRKLGGGLLGIL 365


>UniRef50_UPI0000F1F518 Cluster: PREDICTED: hypothetical protein; n=4;
            Danio rerio|Rep: PREDICTED: hypothetical protein - Danio
            rerio
          Length = 1187

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 490  YHRGSTTAAHQCHELRWRSKTPRTSFAKRVQT*SYLFSLL*RAVIPIISESKVPRSKALL 311
            YHRG   +  Q H+  WR+     S  ++V    Y    + R+ + +   ++  R+  LL
Sbjct: 1001 YHRGKLLSVSQVHQRTWRAPRQSPSVQRKVGIQCYCV-FIRRSHVALHYRNRSHRNPVLL 1059

Query: 310  QLLRH 296
             L RH
Sbjct: 1060 SLERH 1064


>UniRef50_Q82SB9 Cluster: Pyrimidine dimer DNA glycosylase; n=8;
           Bacteria|Rep: Pyrimidine dimer DNA glycosylase -
           Nitrosomonas europaea
          Length = 154

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 111 SHTSHYLSKHSSFDHSRYTDIASGMCHFRLH 19
           +H  H L+  S   H+R++D+AS +CH   H
Sbjct: 112 NHLQHKLATRSPIVHARWSDLASPICHPLFH 142


>UniRef50_A0UZ43 Cluster: Periplasmic sensor signal transduction
           histidine kinase; n=1; Clostridium cellulolyticum
           H10|Rep: Periplasmic sensor signal transduction
           histidine kinase - Clostridium cellulolyticum H10
          Length = 468

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 289 KTQILLISLADTENIVSFFWYLYI*QKLGYTMVWNVKRIKFVLGYFVYYL 140
           KTQ +L SL    + +   W  YI   +GY+ VW    +  + G F+ ++
Sbjct: 162 KTQRILTSLYAVPSTICVLWTSYISVAIGYSRVWKA-NVWVIAGEFILFI 210


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,511,505
Number of Sequences: 1657284
Number of extensions: 9319280
Number of successful extensions: 24213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24203
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)