Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0402
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   1.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   2.8  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   3.7  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   4.9  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   4.9  
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    25   6.5  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   8.6  

>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 496 PFY--HRGSTTAAHQCHELRWRSKTPRTSFAKRVQT*SYLF 380
           P Y  H+G TT+AH    + W  K P+    K ++  + LF
Sbjct: 331 PIYNLHKGKTTSAHGSAYIEWEVKFPKKLKGKFLKDLNNLF 371


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -3

Query: 205  GYTMVWNVKRIKFVLGYFVYYLPLRSTTISIQS 107
            G  ++W++ R +FV    VY LP+++  ++ ++
Sbjct: 2364 GNLIIWDLNRAEFVSSLSVYKLPIQTIAVNARN 2396


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 462  ISVTNSVGGPKLRGRRLLNESKHSRIYFPYCREPLFQLYL 343
            +S +  +  P+L  + + NE+ + R+YF +C     Q +L
Sbjct: 1357 LSASTVIAVPELYQKGINNEAFNWRVYFGWCSIAFIQAFL 1396


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 182 YVPHHGVPKFLLDV*IPKKRNNIFS 256
           Y  HH +P F+  + IP K N+ FS
Sbjct: 317 YSMHHFIPSFISLLKIPLKTNDAFS 341


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 423  GRRLLNESKHSRIYFPYCREPLFQLYLRVKFLV 325
            G+R  N+S    ++F Y  E   QLY ++KFL+
Sbjct: 1332 GKRCCNKSCRGSVHFEYNDE---QLYNQIKFLL 1361


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = -1

Query: 279 FY**VSLTLKILFLFFGIYTSNKNLGTPWCGT*NALNLY*ATSCTTFHFVVPLYPSSHTS 100
           FY   S+ L +LF  F IY  ++ L   W        LY         ++VP   SSH  
Sbjct: 149 FYLFFSIALFLLFSDFLIYWIHRALHHRW--------LYAPLHKLHHKWIVPTPYSSHAF 200

Query: 99  HYLSKHS 79
           HYL  +S
Sbjct: 201 HYLDGYS 207


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 391 TMFGLV*QTTSSEFWTANGVRDTDEQRWWNRG 486
           T   +V    S+  W A  +RD D+ +W  +G
Sbjct: 31  TFRSMVPSGASTGEWEAKELRDNDKNKWGGKG 62


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 145 STRSSLIQI*CVLRSTPWCTQVFVRCINTKKK 240
           ++ SSL++   +L S+ W   +++RC + K K
Sbjct: 314 NSSSSLMEKDAILSSSSWSQLLYLRCSSCKLK 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,287
Number of Sequences: 5004
Number of extensions: 42321
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)