Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0402
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908...    28   5.0  
12_02_1175 + 26702744-26704507                                         27   6.5  
03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891     27   8.7  

>12_01_0919 -
           9086879-9087064,9087842-9087923,9088357-9089553,
           9089598-9089961,9090086-9090188,9090234-9090479
          Length = 725

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 123 LYPSSHTSHYLSKHSSFDHSRYTDIASGMCHFRLH 19
           +Y + HT   L   +SFD +   ++   +CHF  H
Sbjct: 658 IYQTQHTLPRLEYRTSFDDTGIKNVQRDLCHFINH 692


>12_02_1175 + 26702744-26704507
          Length = 587

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 501 VVHSTTAVPPPLLISVTNS-VGGPKLRGRRLLNESKHSRIYFP 376
           VV    A PPPL +S ++     P+   RRL+ +  HS +Y P
Sbjct: 305 VVDDDDASPPPLPVSSSSKPTSAPRTFARRLV-DLLHSPLYLP 346


>03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891
          Length = 155

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 472 TAAHQCHELRWRSKTPR 422
           TAAHQ H  RWRS  P+
Sbjct: 37  TAAHQAHCGRWRSSGPQ 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,473
Number of Sequences: 37544
Number of extensions: 247570
Number of successful extensions: 608
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)