Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0402
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   27   6.7  
SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                 27   8.9  

>SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1173

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = -2

Query: 233 LVFIHLTKTWVHHGVERKTH*ICIRLLRVLPSTS*YHYIHPVTHHIT*ASIARLITVDIL 54
           LVFI L + W+ H  + KT     +LL + P+T+    + P +H IT  ++   I+VD++
Sbjct: 766 LVFISLGR-WMEHVAKGKTSEALAKLLSLQPATAMLVKLKPGSHQITEETV---ISVDLV 821


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 489  TTAVPPPLLISVTNSVGGPKLRGRRLLN 406
            TTA+PPP+  ++T+S   P   G  ++N
Sbjct: 1206 TTAIPPPMTNTMTHSAPRPPPMGHHMMN 1233


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 165  Y*ATSCTTFHFVVPLYPSSHTSHYLSKHSSFDH---SRYTDIASGMCHFRL-HSRT 10
            Y   S T+ HF +P +P   T HY S   + +H    RY+  ++   HF + H RT
Sbjct: 889  YSGPSNTSLHFAIP-HP--RTPHYTSLFHTLEHLTTLRYSTPSNTSLHFAIPHPRT 941


>SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 286 TQILLISLADTENIVSFFWY 227
           T +L++S A   N+VSFFWY
Sbjct: 32  TVLLVVSPAVIVNLVSFFWY 51


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 498  VHSTTAVPPPLLISVTNSVGGPKLRGRRLLNESKHSRIYFPYCREPL 358
            V    A PPP+ + V     G +L  RRL   ++    Y+P    PL
Sbjct: 916  VRVPVATPPPVRVPVATPPPGDRLGHRRLDWRARTGVKYYPNSSRPL 962


>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 391 SYLFSLL*RAVIPIISESKVPR-SKALLQLLRHTLKTQILLISLA 260
           +Y F     +++P+I  S+  R  +ALLQ LRH  K    L  +A
Sbjct: 627 AYFFLFASSSLMPVIFYSRAMRFRRALLQFLRHPCKASSYLDHVA 671


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,354
Number of Sequences: 59808
Number of extensions: 295723
Number of successful extensions: 778
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)