Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0402
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere...    27   5.9  
AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical...    27   7.8  
AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical...    27   7.8  

>U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical
           protein C37C3.11 protein.
          Length = 161

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 SVSARLISKICVFSV*RKSCSKALLRGTLLSDII-GITALY 371
           S+SA L S  C+F     S  + +L G LLS +I G+TAL+
Sbjct: 65  SISALLFSVFCLFKRKIGSTYEVVLHGYLLSVLINGLTALF 105


>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
           protein K08H10.7 protein.
          Length = 1020

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 122 SGTTKWKVVHEVA*YKFNAFYVPHHGV 202
           SGTT  K++  V+ YKF+ F   HHGV
Sbjct: 899 SGTTVDKLI--VSKYKFDFFLASHHGV 923


>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
           promoting factorRDE-1 protein.
          Length = 1020

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 122 SGTTKWKVVHEVA*YKFNAFYVPHHGV 202
           SGTT  K++  V+ YKF+ F   HHGV
Sbjct: 899 SGTTVDKLI--VSKYKFDFFLASHHGV 923


>AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical
            protein Y116A8C.16c protein.
          Length = 982

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 288  KRRFY**VSLTLK--ILFLFFGIYTSNKNLGTPWCGT*NALNLY 163
            KR FY  +S  +   +LF+ F ++  N     PWC   N L ++
Sbjct: 924  KRTFYVLISTIVLSFLLFILFVVFFGNVQFDCPWCIYFNCLPVF 967


>AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16a protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 288 KRRFY**VSLTLK--ILFLFFGIYTSNKNLGTPWCGT*NALNLY 163
           KR FY  +S  +   +LF+ F ++  N     PWC   N L ++
Sbjct: 669 KRTFYVLISTIVLSFLLFILFVVFFGNVQFDCPWCIYFNCLPVF 712


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,685,618
Number of Sequences: 27780
Number of extensions: 231796
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)