Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0402
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 399 KHSRIYFPYCREPLFQLYLRVKFLVAKLYYNF 304
           K + IY+  C EP   +   V      LYY F
Sbjct: 205 KRNEIYYNCCPEPYIDITFVVIIRRRTLYYFF 236


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 395 CLDSFSKRRPRSFGPPT 445
           CLD+ S RR    G PT
Sbjct: 645 CLDASSSRRGSKIGSPT 661


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 432 KLRGRRLLNESKHSRIYFPYC 370
           KL G    +  K+SRI FP C
Sbjct: 395 KLYGMTPSDIDKYSRIVFPVC 415


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 432 KLRGRRLLNESKHSRIYFPYC 370
           KL G    +  K+SRI FP C
Sbjct: 395 KLYGMTPSDIDKYSRIVFPVC 415


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 399 KHSRIYFPYCREPLFQLYLRVKFLVAKLYY 310
           +H + Y+P C EP   ++  +      L+Y
Sbjct: 210 RHKK-YYPCCDEPYPDIFFNITLRRKTLFY 238


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 432 KLRGRRLLNESKHSRIYFPYC 370
           KL G    +  K+SRI FP C
Sbjct: 333 KLYGMTPSDIDKYSRIVFPVC 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 124 WYYEVEGSTRSSLIQI 171
           WY  +EGS+R   +Q+
Sbjct: 246 WYKFIEGSSRRQPVQL 261


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 417 RLLNESKHSRIYFPY 373
           R LN  + SR++FP+
Sbjct: 397 RALNIDRVSRVFFPF 411


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 119 YSGTTKWKVVH 151
           Y+  T+W++VH
Sbjct: 202 YNNNTEWEIVH 212


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 166 VLGYFVYYLPLRSTTISIQSHITLLE 89
           ++GY+       STT+S+++ I+ +E
Sbjct: 1   MVGYYQMKQITNSTTMSVKNEISTVE 26


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = -1

Query: 384 YFPYCREPLFQLYLRVKFLVAKLYY 310
           Y+P C EP   +   +      L+Y
Sbjct: 228 YYPCCTEPYSDITFNITMRRKTLFY 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,752
Number of Sequences: 438
Number of extensions: 3014
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)