Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0402
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39000.1 68417.m05525 glycosyl hydrolase family 9 protein end...    29   1.4  
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end...    29   1.8  
At2g36895.1 68415.m04525 expressed protein                             27   7.3  
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    27   7.3  
At5g08400.1 68418.m00989 expressed protein predicted proteins, A...    27   9.6  
At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein end...    27   9.6  
At4g20060.1 68417.m02935 expressed protein  ; expression support...    27   9.6  

>At4g39000.1 68417.m05525 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291
          Length = 493

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 505 PRRPFYHRGSTTAAHQCHELRWRSKTPRTSFA 410
           P R F H G     H C E      TPRT+FA
Sbjct: 131 PNRIFVHVGEVQPDHDCWERPEDMDTPRTAFA 162


>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291 A short intron was annotated between exons
           4 and 5 to circumvent a frameshift.   The frameshift may
           be artificial due to a sequencing error, or
           alternatively is genuine suggesting a truncated protein
           or pseudogene.
          Length = 495

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 505 PRRPFYHRGSTTAAHQCHELRWRSKTPRTSFA 410
           P R F   G  T  HQC E      TPRT++A
Sbjct: 129 PNRIFVQVGEPTPDHQCWERPEDMDTPRTAYA 160


>At2g36895.1 68415.m04525 expressed protein 
          Length = 232

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 102 SHYLSKHSSFDHSRYTDIASGMC 34
           S  L KH  F  S Y D A G+C
Sbjct: 109 SRSLEKHQKFHESAYMDPAQGLC 131


>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 417 RLLNESKHSRIYFPYCREPLFQL 349
           RLLN+ K+ R    +C E LF L
Sbjct: 306 RLLNQKKYDRALIDHCLEKLFHL 328


>At5g08400.1 68418.m00989 expressed protein predicted proteins,
           Arabidopsis thaliana and Synechocystis sp.
          Length = 333

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -1

Query: 462 ISVTNSVGGPKLRGRRLL--NESKHSRIYFPYCREPLFQLYLRVKFLVAKLYYNF 304
           IS  N   G   RGRRLL   E K  R Y      P +  YL + F  A   + F
Sbjct: 59  ISAANKGSGTTARGRRLLKVREEKRKRDYDRLHDYPSWAKYLFLSFSFALQVFVF 113


>At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291
          Length = 497

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 505 PRRPFYHRGSTTAAHQCHELRWRSKTPRTSFA 410
           P R F   G   A H C E      TPRT++A
Sbjct: 135 PNRIFVQVGDPIADHNCWERPEDMDTPRTAYA 166


>At4g20060.1 68417.m02935 expressed protein  ; expression supported
           by MPSS
          Length = 1134

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -3

Query: 418 SFAKRVQT*SYLFSLL*RAVIPIISESKVPRSKALLQLLRHTLKTQILLISLADTENIVS 239
           S  K     ++L S L   +IP + E K   ++A +    H L  + +  SLA   +I S
Sbjct: 258 SLTKLASRSTHLASELAEVIIPFLGEDKTSHARAAVLRCLHFLIERGMCFSLAHERDIAS 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,798,600
Number of Sequences: 28952
Number of extensions: 209624
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)