Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0401
(308 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 115 2e-25
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 113 1e-24
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 103 6e-22
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 96 1e-19
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 94 5e-19
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 93 8e-19
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 88 3e-17
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 88 3e-17
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 85 3e-16
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 84 5e-16
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 77 8e-14
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 73 2e-12
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 73 2e-12
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 70 1e-11
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 68 4e-11
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 63 1e-09
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 62 2e-09
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 59 2e-08
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 49 2e-05
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 49 2e-05
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 47 9e-05
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 46 2e-04
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 45 3e-04
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 45 3e-04
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 45 4e-04
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 41 0.006
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 37 0.10
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 36 0.18
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 33 0.94
UniRef50_A0BK90 Cluster: Chromosome undetermined scaffold_111, w... 31 3.8
UniRef50_Q1GW38 Cluster: Putative uncharacterized protein; n=1; ... 31 5.0
UniRef50_Q8EMJ9 Cluster: Muconate cycloisomerase; n=2; Bacillace... 31 6.6
UniRef50_Q7QNZ3 Cluster: GLP_149_9791_7437; n=2; Giardia lamblia... 31 6.6
UniRef50_A2X658 Cluster: Putative uncharacterized protein; n=3; ... 30 8.8
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 115 bits (276), Expect = 2e-25
Identities = 55/79 (69%), Positives = 64/79 (81%)
Frame = +2
Query: 71 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 251 HQTSAESWGTGRAVDRIPR 307
HQTSAESWGTGRAV RIPR
Sbjct: 60 HQTSAESWGTGRAVARIPR 78
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 113 bits (271), Expect = 1e-24
Identities = 55/81 (67%), Positives = 64/81 (79%)
Frame = +2
Query: 65 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 244
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSEL 60
Query: 245 AGHQTSAESWGTGRAVDRIPR 307
AGHQTSAESWGTGRAV RIPR
Sbjct: 61 AGHQTSAESWGTGRAVARIPR 81
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 103 bits (248), Expect = 6e-22
Identities = 50/76 (65%), Positives = 56/76 (73%)
Frame = +2
Query: 80 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 259
+RP VSV S T G PLP VF +PIRPD+V VH M+KN RQPY VS++AGHQT
Sbjct: 3 SRPTVSVLSADG-TATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQT 61
Query: 260 SAESWGTGRAVDRIPR 307
SAESWGTGRAV RIPR
Sbjct: 62 SAESWGTGRAVARIPR 77
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 96.3 bits (229), Expect = 1e-19
Identities = 46/70 (65%), Positives = 54/70 (77%)
Frame = +2
Query: 98 VYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 277
VY++KSE + LP VF+AP+RPD+V+ VH + KN RQPY VS EAGHQTSAESWG
Sbjct: 127 VYNDKSEPTDTQIR-LPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWG 185
Query: 278 TGRAVDRIPR 307
TGRAV RIPR
Sbjct: 186 TGRAVARIPR 195
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 94.3 bits (224), Expect = 5e-19
Identities = 46/79 (58%), Positives = 56/79 (70%)
Frame = +2
Query: 71 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
++ ARP+VSV+ T ++ PLP VF +P+R DLV V +MSKN RQ Y VS +AG
Sbjct: 1 MTFARPIVSVFPSNDSTKATSSIPLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAG 60
Query: 251 HQTSAESWGTGRAVDRIPR 307
HQ SAESWGTGRAV RIPR
Sbjct: 61 HQHSAESWGTGRAVARIPR 79
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 93.5 bits (222), Expect = 8e-19
Identities = 47/76 (61%), Positives = 55/76 (72%)
Frame = +2
Query: 80 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 259
ARP VSVYS S++V G PLP VF APIR D+V VH +M+KNSRQ Y V++ +G
Sbjct: 3 ARPSVSVYSASSDSVVGTC-PLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNH 61
Query: 260 SAESWGTGRAVDRIPR 307
SA SWGTGRAV RIPR
Sbjct: 62 SAHSWGTGRAVARIPR 77
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 88.2 bits (209), Expect = 3e-17
Identities = 42/77 (54%), Positives = 55/77 (71%)
Frame = +2
Query: 77 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 256
V RP+VSV+S +E G+ +P VF P+R DLV+ VH +MSKN RQ Y +S+ +G+Q
Sbjct: 2 VHRPVVSVFSVSTEKRMGSTI-MPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQ 60
Query: 257 TSAESWGTGRAVDRIPR 307
TSA SWGTGRA+ R PR
Sbjct: 61 TSARSWGTGRALSRTPR 77
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 88.2 bits (209), Expect = 3e-17
Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Frame = +2
Query: 86 PLVSVYSEKSET-VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 262
PLVSV+S T V PLP VF+ PIRPD+V+ VH +++KN RQ + V+ +AG Q S
Sbjct: 5 PLVSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHS 64
Query: 263 AESWGTGRAVDRIPR 307
AESWGTGRAV RIPR
Sbjct: 65 AESWGTGRAVARIPR 79
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 85.0 bits (201), Expect = 3e-16
Identities = 41/79 (51%), Positives = 53/79 (67%)
Frame = +2
Query: 71 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
++ RPL +VY + V G + +P VF+ PIR DL+ + +MSKN R PY V AG
Sbjct: 1 MATIRPLANVYGINGKKVVGEVE-IPVVFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAG 59
Query: 251 HQTSAESWGTGRAVDRIPR 307
++TSAESWGTGRAV RIPR
Sbjct: 60 YETSAESWGTGRAVARIPR 78
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 84.2 bits (199), Expect = 5e-16
Identities = 43/75 (57%), Positives = 52/75 (69%)
Frame = +2
Query: 83 RPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 262
RP VSV++ GA +P VF AP+R DLV VH +MSKN RQ Y VSK +G+QTS
Sbjct: 4 RPEVSVHNATDGERVGATL-MPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTS 62
Query: 263 AESWGTGRAVDRIPR 307
A SWGTGRA+ R+PR
Sbjct: 63 ARSWGTGRAMARVPR 77
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 77.0 bits (181), Expect = 8e-14
Identities = 40/76 (52%), Positives = 51/76 (67%)
Frame = +2
Query: 80 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 259
+RP V++Y + + LP VF APIR D+V+ V+ + SKN+RQP VS +AG Q
Sbjct: 3 SRPFVTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQH 62
Query: 260 SAESWGTGRAVDRIPR 307
SA SWGTGRAV RIPR
Sbjct: 63 SAISWGTGRAVARIPR 78
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 72.5 bits (170), Expect = 2e-12
Identities = 36/74 (48%), Positives = 44/74 (59%)
Frame = +2
Query: 86 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 265
P V V+ V A P P VF P+RPD++N VH + K R PY VS+ AG Q +A
Sbjct: 3 PTVKVFGPTGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60
Query: 266 ESWGTGRAVDRIPR 307
SWG GRAV R+PR
Sbjct: 61 HSWGPGRAVARLPR 74
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 72.5 bits (170), Expect = 2e-12
Identities = 36/73 (49%), Positives = 49/73 (67%)
Frame = +2
Query: 89 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 268
L +VY+ + A P + +PIRPD+V+ VH++++KN RQP+ AGHQ SAE
Sbjct: 7 LTTVYNTDGKARDTTAVPSVIRY-SPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSAE 65
Query: 269 SWGTGRAVDRIPR 307
SWGTGRAV R+PR
Sbjct: 66 SWGTGRAVARVPR 78
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 69.7 bits (163), Expect = 1e-11
Identities = 36/72 (50%), Positives = 43/72 (59%)
Frame = +2
Query: 92 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 271
++ Y TV+ LP VF PIR DLV + +RQPY VSK AG Q SAES
Sbjct: 5 INCYEADGVTVKKTLD-LPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAES 63
Query: 272 WGTGRAVDRIPR 307
WGTGRA+ R+PR
Sbjct: 64 WGTGRAIARVPR 75
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 68.1 bits (159), Expect = 4e-11
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +2
Query: 143 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVDRIPR 307
+P VF + IR D+V VH +M KN RQ Y VS AG TSA SWGTGRAV R+PR
Sbjct: 19 IPKVFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWGTGRAVSRVPR 73
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 63.3 bits (147), Expect = 1e-09
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = +2
Query: 176 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVDRIPR 307
D+VN VH ++ KN QPY VS+ AG+QTSAESWGTGRA +PR
Sbjct: 25 DVVNFVHSNLHKNDSQPYAVSESAGYQTSAESWGTGRARGPMPR 68
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 62.1 bits (144), Expect = 2e-09
Identities = 30/77 (38%), Positives = 51/77 (66%)
Frame = +2
Query: 77 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 256
++R V+V +++ + + + LP VF PIR ++V +V+V+++KN++QP+ AG +
Sbjct: 1 MSRQTVNVLTQEGQ--KASTIELPKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKK 58
Query: 257 TSAESWGTGRAVDRIPR 307
SA SWGTGRA +PR
Sbjct: 59 VSAISWGTGRAKACVPR 75
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 59.3 bits (137), Expect = 2e-08
Identities = 29/74 (39%), Positives = 42/74 (56%)
Frame = +2
Query: 86 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 265
P+ ++ E+ +TV+ LP F+ P+R DL+ ++ N RQPY AG +TSA
Sbjct: 4 PVFNLEGEEVDTVE-----LPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSA 58
Query: 266 ESWGTGRAVDRIPR 307
ESWG G V +PR
Sbjct: 59 ESWGAGHGVAMVPR 72
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 49.2 bits (112), Expect = 2e-05
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 92 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 271
++VYS K + + LP +F+ RPD++ +SM QP+ AG +T+AES
Sbjct: 4 INVYSLKGDITEEIE--LPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAES 61
Query: 272 WGTGRAVDRIPR 307
+G+GR +PR
Sbjct: 62 FGSGRGAAMVPR 73
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 48.8 bits (111), Expect = 2e-05
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +2
Query: 209 KNSRQPYCVSKEAGHQTSAESWGTGRAVDRIPR 307
++++ V +AGHQTSAESWGTGRAV RIPR
Sbjct: 22 ESTKDTLTVPNKAGHQTSAESWGTGRAVARIPR 54
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 46.8 bits (106), Expect = 9e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +2
Query: 143 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVDRIPR 307
LP +F P+R DL+ V ++ +S QP AG +TSAES+G + R+PR
Sbjct: 25 LPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPR 79
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 46.0 bits (104), Expect = 2e-04
Identities = 27/73 (36%), Positives = 36/73 (49%)
Frame = +2
Query: 89 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 268
+V VY E+ LP +F+ P+R DL+ +S QP AG +TSA
Sbjct: 15 IVPVYDERGGEKDSVV--LPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAV 72
Query: 269 SWGTGRAVDRIPR 307
S G GR V R+PR
Sbjct: 73 SLGVGRGVARVPR 85
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 45.2 bits (102), Expect = 3e-04
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = +2
Query: 146 PFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVDRIPR 307
P F PIRPDL+ ++S QP V + AG + S ES+G G + RIPR
Sbjct: 45 PLHFLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPR 98
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 45.2 bits (102), Expect = 3e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 143 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVDRIPR 307
LP VF+ P+R DL+ + N +Q Y + AG +T AES+G+GR +P+
Sbjct: 18 LPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK 72
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 44.8 bits (101), Expect = 4e-04
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 143 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVDRIPR 307
LP VF RPD++ +++ + RQPY + +G S E+WG G R+PR
Sbjct: 18 LPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPR 72
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 40.7 bits (91), Expect = 0.006
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +2
Query: 116 ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK-------EAGHQTSAESW 274
E G A LP VF IR DL+ ++ N RQ Y + +AG + S E W
Sbjct: 41 EAKNGKAVTLPDVFSGEIREDLIRRAVLASRANRRQSYGHREHDGKRKPQAGMKHSVEWW 100
Query: 275 GTGRAVDRIPR 307
G GR V RI R
Sbjct: 101 GKGRGVSRIMR 111
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 36.7 bits (81), Expect = 0.10
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +2
Query: 92 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 271
V +YS E ++G LP VF +R D++ ++S + RQPY S AG + +
Sbjct: 5 VPIYSVSGE-MKGEID-LPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHT 62
Query: 272 WGTGRAVDRIPR 307
G + R+PR
Sbjct: 63 TRPGLGISRMPR 74
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 35.9 bits (79), Expect = 0.18
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 128 GAAKPLPFVFKAPIRPDLVNDVHVSMSKN 214
GA+ +P VF +PIR D+VN VH ++KN
Sbjct: 15 GASCAMPEVFLSPIRADIVNAVHTGLAKN 43
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 33.5 bits (73), Expect = 0.94
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 245 AGHQTSAESWGTGRAVDRIPR 307
+G+Q SA+SWG GR + RIPR
Sbjct: 59 SGNQVSAKSWGPGRGLARIPR 79
>UniRef50_A0BK90 Cluster: Chromosome undetermined scaffold_111, whole
genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_111, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 1552
Score = 31.5 bits (68), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 64 NESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ 186
NES+G T S+ + G + PP +++ +HP+ PGQ
Sbjct: 1425 NESLGEATMSLKPIIKRLSRDGKYEMPPTKIKLSHPNYPGQ 1465
>UniRef50_Q1GW38 Cluster: Putative uncharacterized protein; n=1;
Sphingopyxis alaskensis|Rep: Putative uncharacterized
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 180
Score = 31.1 bits (67), Expect = 5.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 68 SLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY 229
++S P+ +Y E T+QG +P P+ + R L DV N PY
Sbjct: 19 TISADVPMAKIYQEPRSTLQGGHRPQPWYLEFEARRPLGRDVFTGWITND-DPY 71
>UniRef50_Q8EMJ9 Cluster: Muconate cycloisomerase; n=2;
Bacillaceae|Rep: Muconate cycloisomerase -
Oceanobacillus iheyensis
Length = 391
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 253 VTSLLAHAVGLPRVLGHRNVNIIDQVRTD 167
+T L HAVG+PR G N ++I ++ TD
Sbjct: 3 ITDLELHAVGIPRHTGFVNKHVIVKIHTD 31
>UniRef50_Q7QNZ3 Cluster: GLP_149_9791_7437; n=2; Giardia lamblia
ATCC 50803|Rep: GLP_149_9791_7437 - Giardia lamblia ATCC
50803
Length = 784
Score = 30.7 bits (66), Expect = 6.6
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 74 SVARPLVSVYSEKS--ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 247
SVA P VYS+++ T +P P + + P ++ V + + + S+ PY +S+ +
Sbjct: 350 SVASP--PVYSDRAPHSTDFQRLRPAPLLPQTPSSDSNISLVTLPLGQESKDPYSLSRTS 407
Query: 248 GHQTSAESWGTGRAVDRIPR 307
Q SA + R + PR
Sbjct: 408 LSQNSATTTNEFRVSAKTPR 427
>UniRef50_A2X658 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 411
Score = 30.3 bits (65), Expect = 8.8
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +1
Query: 91 SVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQ 240
SVG E DGAG + PP + A + Q VQELEA L +E+
Sbjct: 211 SVGEDEETRDGAGHDEPPPAPAEPASEAALAQ-AQLAQVQELEAKLQQER 259
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,079,415
Number of Sequences: 1657284
Number of extensions: 5761203
Number of successful extensions: 15088
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 14786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15083
length of database: 575,637,011
effective HSP length: 79
effective length of database: 444,711,575
effective search space used: 10228366225
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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