Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0401
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   111   2e-26
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   110   4e-26
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   1.1  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   1.5  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   3.4  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   4.5  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    24   4.5  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    24   5.9  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   5.9  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    24   5.9  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    23   7.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  111 bits (267), Expect = 2e-26
 Identities = 52/79 (65%), Positives = 62/79 (78%)
 Frame = +2

Query: 71  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 251 HQTSAESWGTGRAVDRIPR 307
           HQTSAESWGTGRA+ RIPR
Sbjct: 60  HQTSAESWGTGRALARIPR 78


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  110 bits (265), Expect = 4e-26
 Identities = 51/79 (64%), Positives = 62/79 (78%)
 Frame = +2

Query: 71  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 251 HQTSAESWGTGRAVDRIPR 307
           HQTSAESWGTGRA+ RIPR
Sbjct: 60  HQTSAESWGTGRALARIPR 78


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 132 APCTVSLFSEYTDTKGRATDRLISLL 55
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 89  KVG-LPIDSFRYFSEAIPLKY-TLIAVI 12
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 70  SIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGP 180
           SI SP+ SVG   +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +2

Query: 122 VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 262
           +QG+  P  F  +    P+ +   H   ++    PY   K+  H+ S
Sbjct: 709 LQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHKLS 755


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 237 ARRLVTKPVLNHGVLDVLSTEFRV 308
           A++L   PVL+   +D LS+ FRV
Sbjct: 242 AKQLNLMPVLDSPTIDFLSSHFRV 265


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 189 SLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRATDRL 67
           SL+ S R+GAL++  +   + C   +    T  +G + DR+
Sbjct: 325 SLSLSARIGALHSLNKKQVSLCDRFMLGGSTSLRGFSEDRI 365


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 59  SEMSLSVARPLVSVYSE 109
           SEMSL++A P+ + Y+E
Sbjct: 96  SEMSLTIALPISAAYTE 112


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 301 NSVDSTSSTP*FSTGLVTSLLAHAVGL 221
           NS+D+T  +   S GLV+S L    GL
Sbjct: 418 NSIDNTEISEVVSLGLVSSALDKITGL 444


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 121 GAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELE 219
           G G S  PP  ++G   S   +   RF+ + LE
Sbjct: 131 GMGNSSRPPFDIKGQTASEKVEETERFFTESLE 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,337
Number of Sequences: 5004
Number of extensions: 21386
Number of successful extensions: 53
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)