Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0401
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 93 3e-20
07_01_0578 + 4295386-4296489,4297394-4297507 91 1e-19
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 0.32
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 0.56
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 1.7
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 2.3
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 27 3.0
09_06_0153 - 21243108-21245660 27 3.0
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 3.0
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 27 4.0
05_04_0292 + 19893895-19894983 27 4.0
09_02_0384 - 8294914-8297817 26 5.2
06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709 26 5.2
01_01_0882 - 6912053-6912319,6912434-6912484,6912979-6913125,691... 26 5.2
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 26 6.9
05_04_0220 - 19167485-19169290 26 6.9
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 25 9.2
10_08_0841 - 20948719-20948919,20949624-20950388,20950475-209510... 25 9.2
09_04_0541 + 18437075-18440062 25 9.2
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122... 25 9.2
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 25 9.2
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 93.5 bits (222), Expect = 3e-20
Identities = 47/79 (59%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +2
Query: 74 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 251 HQTSAESWGTGRAVDRIPR 307
HQTSAESWGTGRAV RIPR
Sbjct: 63 HQTSAESWGTGRAVSRIPR 81
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 91.5 bits (217), Expect = 1e-19
Identities = 46/77 (59%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Frame = +2
Query: 83 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 256
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 257 TSAESWGTGRAVDRIPR 307
TSAESWGTGRAV RIPR
Sbjct: 66 TSAESWGTGRAVSRIPR 82
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 0.32
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 46 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 201
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 0.56
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 46 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 201
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 265 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 134
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 158 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 271
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 46 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 201
ASL N I +PT +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 132 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 10
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 137 WLHPAPSHSSLN-TPTLKVGLPIDSF 63
WL P P+H ++N L + +P+D F
Sbjct: 871 WLKPTPAHVAMNPAEALAMQIPVDHF 896
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 46 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 201
ASL+ N ++ +PT V ++ G S V + GAH G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>05_04_0292 + 19893895-19894983
Length = 362
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 179 GPDGWAP*TRTGGAWLHPAPSHSSLNTPTLK 87
G D WAP GG LHP H++ + L+
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELE 241
>09_02_0384 - 8294914-8297817
Length = 967
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 89 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSK 211
LV +Y S V PLP + + PIR LV +H+++ K
Sbjct: 116 LVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVG-MHLNVMK 155
>06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709
Length = 71
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 219 LEFLDIET*TSLTRSGRMGALNTNGRGLAAPCTVSLFSE 103
LE L E S+ R GR+ + G+G PC+ ++ E
Sbjct: 28 LEALQEEESVSVQRRGRVENSSREGKGRVMPCSAYVWGE 66
>01_01_0882 -
6912053-6912319,6912434-6912484,6912979-6913125,
6913220-6913426,6913524-6914051
Length = 399
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 204 CPRTRGSPTA*ARRLVTKPVLNHGVLD 284
C RT GSP A RLV + +++G +
Sbjct: 36 CTRTGGSPPAPPHRLVARRAMSNGAAE 62
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 256 LVTSLLAHAVGLPRVLGHRNVNIIDQV 176
L + H +G+ VLG +N+ ++DQ+
Sbjct: 105 LACGAVGHIMGVGVVLGLKNIGVLDQI 131
>05_04_0220 - 19167485-19169290
Length = 601
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 177 SGRMGALNTNGRGLAAPCTVSLFS 106
+G +GAL +NG +A C+ SLF+
Sbjct: 328 AGPLGALESNGWVYSAHCSFSLFT 351
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 295 VDSTSSTP*FSTGLVTSLLAHAVGLPRVL 209
V+ P TG S LA AVG+PRVL
Sbjct: 85 VNGFVENPHKKTGYSISELAEAVGIPRVL 113
>10_08_0841 -
20948719-20948919,20949624-20950388,20950475-20951023,
20951097-20951237,20951313-20951519,20951556-20951724,
20951899-20952003,20952087-20952208,20952291-20952412,
20953234-20953516
Length = 887
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 146 PFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS--KEAGHQTSAESWGTGRAVDRIP 304
PF F PI +++ D H++ S + + +GH TS + T + IP
Sbjct: 812 PFYFICPISQEVMRDPHIAADGFSYEEEAIKGWLGSGHNTSPMTKSTLEHLQLIP 866
>09_04_0541 + 18437075-18440062
Length = 995
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 149 TGGAWLHPAPSHSS-LNTPTLKVGLPIDSFRYFSEAI 42
T G+WL PAP S+ L T K+ +S + + E++
Sbjct: 714 TAGSWLAPAPMSSTLLATMASKLPTKANSIQLWGESL 750
>09_01_0086 -
1225132-1225299,1225530-1225679,1227629-1228006,
1229103-1229150
Length = 247
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 200 KREHH*PGPDGWAP*TRTGGAWLHPAPSHSSLNTPTLKVGLPIDSF 63
+ EHH P P + WLH APS + + K G+ D F
Sbjct: 159 RSEHH--RPKAGTPHCTSCHCWLHNAPSLTCSLSCKKKAGISSDDF 202
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 101 YSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQ 223
Y E +T+ G L F + PIR L N + + + + RQ
Sbjct: 275 YQEAVDTLSGIQLALYFSHRQPIRTPLQNTIALYWALSDRQ 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,437,753
Number of Sequences: 37544
Number of extensions: 168926
Number of successful extensions: 412
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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