Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0401
         (308 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               105   7e-24
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            29   0.77 
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            27   4.1  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    27   4.1  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)               25   9.5  
SB_23703| Best HMM Match : TTL (HMM E-Value=0)                         25   9.5  
SB_51790| Best HMM Match : TTL (HMM E-Value=0)                         25   9.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  105 bits (252), Expect = 7e-24
 Identities = 50/76 (65%), Positives = 60/76 (78%)
 Frame = +2

Query: 80  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 259
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 260 SAESWGTGRAVDRIPR 307
           SAESWGTGRAV RIPR
Sbjct: 60  SAESWGTGRAVARIPR 75


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 170 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAVD 295
           RP       +SM K  R+PY  + +E GH+    S  T R V+
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNVE 198


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 147  GRGLAAPCTVSLFSEYTDTKGRATDRLI 64
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 191 HH*PGPDGWAP*TRTGGAWLHPAPSHSSLNTPT 93
           HH      W   T+T   W HP  + ++L  PT
Sbjct: 117 HHTKTQANWYHPTKTQANWYHPTKTQANLYHPT 149


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 176  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVDRI 301
            D+ NDV ++++  +  PY +     H T  E   TG+ + ++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 56  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 229
           S +M L   R  +  Y+E    ++   + LP V  AP+  D+V +V  S  K S + Y  
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531

Query: 230 --CVSKEA 247
             C S EA
Sbjct: 532 ENCPSVEA 539


>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 170 RPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVD 295
           RP  +++VH ++  +     C+S   GHQ S E  G G  +D
Sbjct: 199 RPAEISEVH-ALHIHHMCENCLSSFTGHQASHEVGGEGGELD 239


>SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)
          Length = 711

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 180 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTKG 85
           + G     +T+G  L +PC  SLF  + D  G
Sbjct: 437 QQGNSQVCSTDGVTLQSPCHASLFHRHVDYPG 468


>SB_23703| Best HMM Match : TTL (HMM E-Value=0)
          Length = 657

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 56  SSEMSLSVARPLVSVYSEKSETVQGAAKPL 145
           SS +S S  RP   + S K+ +++ A KPL
Sbjct: 346 SSHLSKSNVRPKSQLLSSKNHSLRSALKPL 375


>SB_51790| Best HMM Match : TTL (HMM E-Value=0)
          Length = 536

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 56  SSEMSLSVARPLVSVYSEKSETVQGAAKPL 145
           SS +S S  RP   + S K+ +++ A KPL
Sbjct: 346 SSHLSKSNVRPKSQLLSSKNHSLRSALKPL 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,217,127
Number of Sequences: 59808
Number of extensions: 170438
Number of successful extensions: 357
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)