Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0401
(308 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 88 1e-18
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 27 2.7
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 3.5
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 3.5
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 3.5
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 3.5
U55373-13|AAC25891.1| 151|Caenorhabditis elegans Hypothetical p... 25 8.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 25 8.1
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 25 8.1
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 25 8.1
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 88.2 bits (209), Expect = 1e-18
Identities = 44/76 (57%), Positives = 54/76 (71%)
Frame = +2
Query: 80 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 259
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 260 SAESWGTGRAVDRIPR 307
SAESWGTGRAV RIPR
Sbjct: 62 SAESWGTGRAVARIPR 77
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = +2
Query: 65 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 238
MS++V P +S V + + F++ P ++ D H+ + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 171 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 58
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 171 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 58
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 180 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 67
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 180 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 67
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597
>U55373-13|AAC25891.1| 151|Caenorhabditis elegans Hypothetical
protein F26F12.4 protein.
Length = 151
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 208 QELEAALLREQGGWSPNQ 261
+ELEAA R GG++P+Q
Sbjct: 120 EELEAAEFRNAGGYAPSQ 137
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 179 GPDGWAP*TRTGGAWLHPAPSHSSLNTPTLKVGLPI 72
GPDG T G +++PA PT K G P+
Sbjct: 3410 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3445
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 179 GPDGWAP*TRTGGAWLHPAPSHSSLNTPTLKVGLPI 72
GPDG T G +++PA PT K G P+
Sbjct: 3455 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3490
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 179 GPDGWAP*TRTGGAWLHPAPSHSSLNTPTLKVGLPI 72
GPDG T G +++PA PT K G P+
Sbjct: 3455 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,723,616
Number of Sequences: 27780
Number of extensions: 127049
Number of successful extensions: 341
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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