Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0401
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   103   2e-23
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   101   1e-22
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   0.48 
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   1.1  
At5g01010.1 68418.m00001 expressed protein                             28   1.5  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    28   1.5  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    26   5.9  
At5g41950.1 68418.m05108 expressed protein                             25   7.8  
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin...    25   7.8  
At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative (CH...    25   7.8  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  103 bits (247), Expect = 2e-23
 Identities = 50/83 (60%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
 Frame = +2

Query: 65  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 238
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 239 KEAGHQTSAESWGTGRAVDRIPR 307
           K+AGHQTSAESWGTGRAV RIPR
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPR 83


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  101 bits (242), Expect = 1e-22
 Identities = 50/80 (62%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
 Frame = +2

Query: 74  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 247
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 248 GHQTSAESWGTGRAVDRIPR 307
           GHQTSAESWGTGRAV RIPR
Sbjct: 65  GHQTSAESWGTGRAVSRIPR 84


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +2

Query: 89  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At5g01010.1 68418.m00001 expressed protein
          Length = 409

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -2

Query: 265 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 134
           +TG+  +L+ + VG+P+VL    ++ I Q+   DG +E +RE  G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 143 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 30
           G W+H   SH+  ++  L VG+ +      Y+S + P++Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 189 SLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDT 91
           SLT S R+  LN +   L+ P  VS+   YT T
Sbjct: 185 SLTESTRLYRLNLSFNSLSGPLPVSVARSYTLT 217


>At5g41950.1 68418.m05108 expressed protein
          Length = 565

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 105 EYTDTKGRATDRLISLL*RSYTSEIYTNSGDKD 7
           +  D +GR+  R+++   R Y S I  N  D D
Sbjct: 192 QVNDEEGRSRQRVLAFAARKYASAIERNPDDHD 224


>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
           phosphoesterase family protein contains Pfam profiles:
           PF00149 calcineurin-like phosphoesterase, PF01344 kelch
           motif
          Length = 881

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 137 WLHPAPSHSSLNT 99
           WLHPAP + +L T
Sbjct: 6   WLHPAPQYKTLET 18


>At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative
           (CHX13) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 831

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 135 AAPCTVSLFSEYTDTKGR 82
           AAPC+V++F +  +T+GR
Sbjct: 617 AAPCSVAIFIDRGETEGR 634


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,427,575
Number of Sequences: 28952
Number of extensions: 119842
Number of successful extensions: 331
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)