Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0395
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 86 3e-18
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 39 4e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 37 0.002
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 33 0.033
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 30 0.18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 28 0.95
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 27 1.3
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 5.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 5.1
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 6.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.9
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.9
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 85.8 bits (203), Expect = 3e-18
Identities = 38/81 (46%), Positives = 51/81 (62%)
Frame = +2
Query: 230 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 409
N+ + DW + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 410 NFPDYVQQGVKTMGYKEPTPI 472
FP+YV + VK +G++ PTPI
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPI 148
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 39.1 bits (87), Expect = 4e-04
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 245 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPD 421
D ++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 422 YVQQGVKTMGYKEPTPIASSRL 487
+ ++GY++PT I + +
Sbjct: 428 QTISVINSLGYEKPTSIQAQAI 449
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = +2
Query: 341 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ I
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSI 275
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.7 bits (71), Expect = 0.033
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 332 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIASSRLVR*LCLER 511
+E N E+T S E N + FEE N + + +G+ GY+ P+ + S +++ +C R
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQ-ICKGR 59
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 30.3 bits (65), Expect = 0.18
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 356 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIASSRL 487
V VSG ++ P+ F ++ Q +K GY +PTP+ + +
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSI 200
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 0.95
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 386 PIQYFEEANFPDYVQQGVKTMGYKEPTPIASS 481
PI F+E + +++G+K YKEPTPI ++
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAA 194
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +3
Query: 186 DLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIHILQFSKDHHMKSKSTEIIT 353
+L++++ K N + + +A + FH + F+ HI +F K+++ ++ I+T
Sbjct: 358 ELKEILNKYNGVHTQE-LAGMRRRFHLMTAPPYFIFHIKRFMKNNYFTERNQTIVT 412
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 251 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 394
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 449 PLSLHLVAHNQENL--LLQSIE 390
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 270 LSTKTFMIHILQFSKDHHMKSKSTEIIT 353
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 94 IIPVTR-HD*FSDLVEDVYLNYGFFLTQ 14
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 338 YRNNHEVTVSGVEVHNPIQYFE 403
Y N+ + G EVHNP FE
Sbjct: 290 YMNSESQNLLGDEVHNPFSDFE 311
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 469 RRRFFVTHCLY--TLLHIIRKICFFKVLNRIMNLNATYSYLVIISV 338
RR T CLY + L +I K C + I+ +NA ++L +SV
Sbjct: 524 RRLNIHTTCLYRDSNLQVIIKSCIINSVKSIILINAGLAHLGKVSV 569
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,717
Number of Sequences: 5004
Number of extensions: 35758
Number of successful extensions: 90
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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