Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0395
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  55   3e-08
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   2e-05
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  45   4e-05
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            41   7e-04
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  41   7e-04
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         38   0.006
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)                33   0.18 
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         30   1.3  
SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)          29   3.0  
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)                  28   5.3  
SB_7423| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_47462| Best HMM Match : Ras (HMM E-Value=0)                         27   6.9  
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)             27   6.9  

>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +2

Query: 242 PDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 421
           P+   +  +PFNKNFY+ HP + K+S  E+++ R    + VSG     P   F    F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526

Query: 422 YVQQGVKTMGYKEPTPIASSRL 487
            +   ++ + Y +PT I    L
Sbjct: 527 QMMASIRKLEYTQPTQIQCQAL 548


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/53 (45%), Positives = 34/53 (64%)
 Frame = +2

Query: 314 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
           R  +EV+ YR + ++TV+G  V  P+  FEE+ FPDY+Q   K  G+ EPT I
Sbjct: 57  RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMI 109


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
 Frame = +2

Query: 227 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFE 403
           + ++  D  +V  QPF K+FY   P + K +P E +E+R + E + V G     P++ + 
Sbjct: 49  EELQPVDHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWA 108

Query: 404 EANFPDYVQQGVKTMGYKEPTPIASSRL 487
           +      +   +K   Y++PTPI +  +
Sbjct: 109 QTGVQLKILDVLKKNSYEKPTPIQAQAI 136


>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +2

Query: 287 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 466
           Y  HPT+   +  +V++ R+  E+ V G  V +P+  F   +F + + + +   GY  PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220

Query: 467 PI 472
           PI
Sbjct: 221 PI 222


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +2

Query: 326 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPI 472
           ++  +R+   + V G +V +P++ F    E   FPDY+   V+  GY  PTPI
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPI 189


>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +2

Query: 338 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
           +R +  ++  G  +  PI+ ++EA  PD + + V  +GYK+PTPI
Sbjct: 83  FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPI 127


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +2

Query: 272 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 451
           F  ++YD +  V + S   V+E R  + + + G +   PI+ F + N P  +   +    
Sbjct: 32  FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91

Query: 452 YKEPTPIASSRL 487
           ++ PTPI    L
Sbjct: 92  FQVPTPIQMQSL 103


>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 353 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
           EV VSG      I  FEEAN  +     V+   YK+PTP+
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPV 737


>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
          Length = 185

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 353 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
           EV VSG      I  FEEAN  +     V+   YK+PTP+
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPV 160


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 284 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 424
           + D    VL     E EE  NN  H++ +  + +HNP  YFE+ +  DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264


>SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)
          Length = 411

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 269 VGVKQNPNLGDACSDLQRILFSHQ--ILQILQIYCH 168
           +GVKQ P L  +CS++Q   F+H   I  I    CH
Sbjct: 269 IGVKQQPPLLPSCSEIQSEHFAHTSGIFPIALTPCH 304


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 362 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIASSRL 487
           VSG      I  F E  F + +   +   GY+ PTP+  + L
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAAL 510


>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 233 CSDLQRILFSHQILQILQIYCHRC-QIETN 147
           CS    +L   +IL+   +YC +C Q ETN
Sbjct: 14  CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43


>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
          Length = 401

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 164 CQIETNYRRICCLLQIWN-HRFHGYYSS 84
           C +  +YRR CC L +W  H  + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244


>SB_7423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 389 IQYFEEANFPDYVQQGVKTMGYKEPTPIASSR 484
           I Y ++A  P ++QQ  + +GYKEP  + S R
Sbjct: 6   ISYTKQAT-PAFIQQFKERVGYKEPDNVDSKR 36


>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
          Length = 385

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 510 LSRHSYRTSLELAIGVGSL*PIV-FTPCC 427
           LS H Y T+  + IG+G L  I+ F  CC
Sbjct: 208 LSSHDYATAAYILIGIGFLIAIIGFIGCC 236


>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
          Length = 187

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 510 LSRHSYRTSLELAIGVGSL*PIV-FTPCC 427
           LS H Y T+  + IG+G L  I+ F  CC
Sbjct: 66  LSSHDYATAAYILIGIGFLIAIIGFIGCC 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,975
Number of Sequences: 59808
Number of extensions: 246332
Number of successful extensions: 699
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)