Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0395
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 52 2e-07
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 51 6e-07
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 38 0.003
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 38 0.004
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 38 0.006
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 38 0.006
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 38 0.006
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.49
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 3.4
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 28 3.4
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 28 3.4
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 28 3.4
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 4.6
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr... 27 6.0
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +2
Query: 233 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN 412
+R DW + +L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA
Sbjct: 77 LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAP 136
Query: 413 FPDYVQQGVKTMGYKEPTPIAS 478
P + + + +++PT I S
Sbjct: 137 LPGQIHE-LLYGKFQKPTVIQS 157
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 50.8 bits (116), Expect = 6e-07
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +2
Query: 338 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPI
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPI 327
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +2
Query: 245 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 424
D + Q FNKNFY+ H + + +V +N + V G++ P+ F +F
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 425 VQQGVKTMGYKEPTPI 472
+ + ++ Y++PTPI
Sbjct: 276 LMEAIRKSEYEQPTPI 291
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 233 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNN-HEVTVSGVEVHNPIQYFEEA 409
+ + D V + F KNFY + + + EV+ YR +TV G++ PI+ + +
Sbjct: 250 LAQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQC 309
Query: 410 NFPDYVQQGVKTMGYKEPTPIASSRL 487
+ +K Y +PT I + +
Sbjct: 310 GVNLKMMNVLKKFEYSKPTSIQAQAI 335
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 37.9 bits (84), Expect = 0.004
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 356 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
V +G +V PI F + + +++++ +KT GY PTP+
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPV 192
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 347 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
N V VSG V I++F EA F V + V GY +PTP+
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPV 165
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 347 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
N V VSG V I++F EA F V + V GY +PTP+
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPV 149
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 347 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
N V VSG V I++F EA F V + V GY +PTP+
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPV 146
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.49
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 99 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 215
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 151 RIIAEFVASSKFGTTVSTAIIPV 83
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 151 RIIAEFVASSKFGTTVSTAIIPV 83
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 386 PIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P + F EAN + +Q+ V GY + TPI
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPI 367
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 386 PIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P + F EAN + +Q+ V GY + TPI
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPI 367
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 386 PIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P + F EAN + +Q+ V GY + TPI
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPI 367
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 227 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 126
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 451
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 194
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 451
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 221
>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
protein T21C9.6 protein.
Length = 1215
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 248 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI 391
+ + L+ FN+ Y+ PT L + +E+YR + + G+ NP+
Sbjct: 165 YSNALLKSFNE-IYNDKPTALIENLKTIEKYRKGNVLNQMGLRHRNPL 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,306,279
Number of Sequences: 27780
Number of extensions: 194768
Number of successful extensions: 643
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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