Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0395
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 79 2e-15
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 67 8e-12
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 67 8e-12
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 61 4e-10
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 52 2e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 51 5e-07
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 48 4e-06
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 48 4e-06
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 48 4e-06
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 45 3e-05
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 38 0.004
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 35 0.037
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 33 0.086
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 31 0.35
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 31 0.46
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 31 0.46
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 0.80
At2g33420.1 68415.m04096 expressed protein 28 3.2
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 28 4.3
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 4.3
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 5.7
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 5.7
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 5.7
At2g25460.1 68415.m03049 expressed protein 27 5.7
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 27 7.5
At3g48770.1 68416.m05326 hypothetical protein 27 9.9
At3g19515.1 68416.m02473 expressed protein 27 9.9
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 27 9.9
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 27 9.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 79.0 bits (186), Expect = 2e-15
Identities = 38/84 (45%), Positives = 50/84 (59%)
Frame = +2
Query: 227 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE 406
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 407 ANFPDYVQQGVKTMGYKEPTPIAS 478
FPDYV + VK G+ EPTPI S
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQS 127
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 66.9 bits (156), Expect = 8e-12
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = +2
Query: 260 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 439
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 440 KTMGYKEPTPI 472
+G+ EPTPI
Sbjct: 181 AKLGFTEPTPI 191
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 66.9 bits (156), Expect = 8e-12
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = +2
Query: 260 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 439
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 440 KTMGYKEPTPI 472
+G+ EPTPI
Sbjct: 181 AKLGFTEPTPI 191
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 61.3 bits (142), Expect = 4e-10
Identities = 25/81 (30%), Positives = 42/81 (51%)
Frame = +2
Query: 245 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 424
D S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 425 VQQGVKTMGYKEPTPIASSRL 487
+ +K Y++PT I L
Sbjct: 239 IMSAIKKQAYEKPTAIQCQAL 259
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +2
Query: 245 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 424
D + +PF KNFY + + + EV YR E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 425 VQQGVKTMGYKEPTPIASSRL 487
+ +K + Y++P PI + L
Sbjct: 540 ILDTMKKLNYEKPMPIQTQAL 560
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +2
Query: 245 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 424
D + +PF KNFY + + + V YR E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 425 VQQGVKTMGYKEPTPIASSRL 487
+ +K + Y++P PI + L
Sbjct: 407 ILDTLKKLNYEKPMPIQAQAL 427
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 44.8 bits (101), Expect = 3e-05
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 275 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 442
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 443 TMGYKEPTPI 472
+ G+ PTPI
Sbjct: 452 SAGFPSPTPI 461
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +2
Query: 284 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 463
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 464 TPI 472
TPI
Sbjct: 121 TPI 123
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 34.7 bits (76), Expect = 0.037
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 466
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 467 PI 472
PI
Sbjct: 171 PI 172
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 33.5 bits (73), Expect = 0.086
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +2
Query: 338 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
+R + ++ G + P++ +EE+ + + V+ GYK+P+PI
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPI 339
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 359 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIASS 481
TV GV H F E N + + +T+GYK+PTPI ++
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAA 196
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 332 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 421
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 341 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPI 472
R + + VSG + P++ F E + Y+ + + +G+KEPTPI
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPI 167
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 386 PIQYFEEANFPDYVQQGVKTMGYKEPTPIASSRLV 490
PI+ F++ D V +GV GYK+P+ I LV
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALV 54
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 239 RPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHN 385
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 230 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 397
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 398 FEE 406
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 230 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 397
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 398 FEE 406
EE
Sbjct: 811 NEE 813
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 180 LEDLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIH 296
+ D++ +GK V C A++G+ F S +T M H
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPH 568
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 5.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 155 ETNYRRICCLLQIWNHRFHGYY 90
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPI 472
FE N V +K GYK PTPI
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPI 54
>At3g48770.1 68416.m05326 hypothetical protein
Length = 1899
Score = 26.6 bits (56), Expect = 9.9
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Frame = +3
Query: 144 IIRLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQI---GILFH-----SNLSTKTFMIHI 299
+IR + V E +E GK+ LE TC A++ G+++ LS M ++
Sbjct: 1805 MIRWEREKGVVYAEKMEKTCGKRKLLEYATCFAEVIAKGVMWEREDLIGRLSELVKMAYL 1864
Query: 300 LQFSK---DHHMKSKSTEI 347
++F + + MKSK+ ++
Sbjct: 1865 VEFDEEALEFLMKSKNLQV 1883
>At3g19515.1 68416.m02473 expressed protein
Length = 507
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 326 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 424
E E N E G HNP + EE +PD+
Sbjct: 387 ETESEEENPEDNQKGNPEHNPKEKSEEMQYPDF 419
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +2
Query: 248 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQY 397
W++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 267 WNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 108 VVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKNSLEVRTC 236
V+P+L EATN I+ L V+L + K +L++ C
Sbjct: 643 VIPDLSEATNLEILNLKFCESLVELPSSIRNLNKLLNLDMLNC 685
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,674,873
Number of Sequences: 28952
Number of extensions: 176907
Number of successful extensions: 558
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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