Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0393
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    28   0.83 
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   1.1  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   2.5  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   3.3  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   5.8  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   5.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.8  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   7.7  

>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 324 YSTVLELLPLDPIGVSAKHLYILT-CLQCQLSLEIVKFYRSDPGSNPKHCLQ 172
           Y  V++L    P  V  ++ +I T C++  LS  I + Y  DP +N + CL+
Sbjct: 427 YYDVIKLNGTIPKNVDFENQHIFTACVEIYLSYCITQLYFYDPLTNYETCLE 478


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/58 (20%), Positives = 31/58 (53%)
 Frame = +3

Query: 174 EDNALGLTQDQTDKILQFQDLTGIEDMSICRDVLQRHQWDLEVAIQEQLNIREGRXSV 347
           EDNA G+ Q++ +   +    + I+  ++ +    + +WD+++   +Q+N+     +V
Sbjct: 260 EDNANGVAQEENEGSQEAHFHSRIQSDTVIQSTPTKRKWDVDIQ-NKQINLASAATNV 316


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 428 SLWWFFSKNFLCNVVMYNSRCPSFCGKHRGPPFSNIQL 315
           S + FF  + +  +V+ N R     GKH GP  SNI L
Sbjct: 369 SAFRFFEMSNIHGLVIRNRRLKIGWGKHSGPLPSNIAL 406


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -3

Query: 282 VSAKHLYILTCLQCQLSL 229
           ++A+HL++L+C +C LS+
Sbjct: 213 LAAQHLHLLSCQKCPLSI 230


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 11  ILDNISFLIFKSLNIIAVCFSNQTQTRKISNI 106
           I   I  L FK+LN++   +  +T  + ++NI
Sbjct: 141 ISQKIVNLFFKTLNVVCPIYDQETVEKSLNNI 172


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 177 DNALGLTQDQTDKILQ-FQD 233
           DN LGLT+D+  +IL+ F+D
Sbjct: 112 DNVLGLTEDEIQQILKTFRD 131


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 322 ILEKGGPLCLPQKLGHRLLYMTTLHR-KFLL 411
           ILEK   LC+  KL  RLL M + +  K LL
Sbjct: 775 ILEKDSSLCMDGKLLQRLLTMLSFNEIKILL 805


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  SFLIFKSLNIIAVCFSNQTQTRKISNIGLNFNFFL 130
           S++    +NI+ +  S   +  K++N   N N+FL
Sbjct: 464 SYICGMLINIVGMAGSTGQKVPKVANTMFNLNYFL 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,788
Number of Sequences: 5004
Number of extensions: 31280
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)