Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0393
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0481 - 21304802-21304920,21305063-21305131,21306140-21306557     44   5e-05
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178...    43   1e-04
06_01_1075 - 8770120-8770371,8770684-8770770,8770866-8770946,877...    27   7.6  

>06_03_0481 - 21304802-21304920,21305063-21305131,21306140-21306557
          Length = 201

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +3

Query: 210 DKILQFQDLTGIEDMSICRDVLQRHQWDLEVAI 308
           DK++ FQ +TGI D S+C ++L  H WDL++ +
Sbjct: 7   DKVIYFQAVTGISDHSLCTEILAAHDWDLQLVV 39


>10_08_0654 -
           19616426-19616656,19617046-19617249,19617654-19617824,
           19619617-19620411
          Length = 466

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +3

Query: 210 DKILQFQDLTGIEDMSICRDVLQRHQWDLEVAI 308
           DK+  FQ +TGI D  +C ++L  H WDL++A+
Sbjct: 7   DKVSYFQAVTGISDHDLCTEILAAHNWDLQLAV 39


>06_01_1075 -
           8770120-8770371,8770684-8770770,8770866-8770946,
           8771043-8771177,8771363-8771584,8771676-8771756,
           8771954-8772115,8772991-8773106,8774333-8774474,
           8774592-8774687,8774987-8775125,8776297-8776376
          Length = 530

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 350 KHRGPPFSNIQLFLNCYL 297
           +HRGP +S I  + +CYL
Sbjct: 29  RHRGPDWSGIHCYQDCYL 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,986
Number of Sequences: 37544
Number of extensions: 189463
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)