Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0393
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58978| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_2157| Best HMM Match : ig (HMM E-Value=9e-19)                       27   7.8  
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_58978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 22/49 (44%), Positives = 36/49 (73%)
 Frame = +3

Query: 204 QTDKILQFQDLTGIEDMSICRDVLQRHQWDLEVAIQEQLNIREGRXSVF 350
           Q + ++QFQD+TGI+D+  CR VL+RH+W++E A+Q+  N  EG   ++
Sbjct: 12  QMEVLVQFQDITGIDDVEKCRAVLERHEWNIETAVQDTFNEAEGGLPIY 60


>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 8   EILDNISFLIFKSLNIIAVCFSNQTQTRKISNIGLNFNFFLFP 136
           +ILD   F  FK +N   + FSN      + NI LN   +L P
Sbjct: 288 KILDKGHFTFFKPMNACTLLFSNDID-NVVINITLNVIGYLLP 329


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 144  VNKKSGPMDLEDNALGLTQDQTDKILQFQDL-TGIEDMSICRDVLQRHQWDLEVAIQEQL 320
            VN +S   +LED +L L       IL  +DL T +++      V+Q+ + DL    +E +
Sbjct: 2981 VNDRSKVRELEDRSLSLLNSSRGNILDDEDLITTLDESEKMAHVIQQ-RVDLAEHTEESI 3039

Query: 321  N 323
            N
Sbjct: 3040 N 3040


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 147  NKKSGPMDLEDNALGLTQDQTDKILQFQDLTGIEDMSICRDVLQRHQWDLEV 302
            N+ S  ++L  + L + ++ T+   +     G + +  C+DVL  H+W  E+
Sbjct: 2883 NQVSPQIELRGSRLHVEEESTNHEFRLLLPDGSQFLFRCKDVLDFHRWTNEI 2934


>SB_2157| Best HMM Match : ig (HMM E-Value=9e-19)
          Length = 603

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 11  ILDNISFLIFKSLNIIAVCFSNQTQTR 91
           ILDN++  I+KS  IIAV  +N   +R
Sbjct: 486 ILDNMAEFIYKSRKIIAVMSTNYMSSR 512


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 174  EDNALGLTQDQTDKILQFQDL-TGIEDMSICRDVLQRHQWDLEVAI---QEQLNIREGRX 341
            E+N L LT+D+   + + QDL   +E+    R  L   +   E  I   +E L++ E   
Sbjct: 966  EENVLALTEDKKKLLKEIQDLEDSLEEEESARQKLHLEKVSCEAKIKKLEEDLSLVEDTN 1025

Query: 342  SVFATEAR 365
            S  + E +
Sbjct: 1026 SKISKEKK 1033


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,724,957
Number of Sequences: 59808
Number of extensions: 223046
Number of successful extensions: 399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)