Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0393
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily a...    28   3.9  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    28   3.9  
AF068714-7|AAT68905.1|  592|Caenorhabditis elegans Egg laying de...    27   6.8  
AF040661-5|AAG24212.1|  209|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform b protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 382 CTTVGARASVANTEXRPSLIFNCS*IATSRSHWC 281
           C+T  A A  +NT  R   +   S   + RS WC
Sbjct: 117 CSTTSASALTSNTSMRRDRLVGTSNFGSQRSLWC 150


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 382 CTTVGARASVANTEXRPSLIFNCS*IATSRSHWC 281
           C+T  A A  +NT  R   +   S   + RS WC
Sbjct: 605 CSTTSASALTSNTSMRRDRLVGTSNFGSQRSLWC 638


>AF068714-7|AAT68905.1|  592|Caenorhabditis elegans Egg laying
           defective protein 8,isoform c protein.
          Length = 592

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 38  FKSLNIIAVCFSNQTQTRKISNIGLNFNFFLF 133
           F + N+    FS + +T KISN  + F  FLF
Sbjct: 550 FIAKNLKGFGFSKKQETNKISNFNIVFKGFLF 581


>AF040661-5|AAG24212.1|  209|Caenorhabditis elegans Hypothetical
           protein W10G11.3 protein.
          Length = 209

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 35  IFKSL--NIIAVCFSNQTQTRKISNIGLNFN 121
           IFK L  NII +  SN+T   K+  I +NFN
Sbjct: 55  IFKELGENIIRLDISNKTGPTKVIEICINFN 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,646,243
Number of Sequences: 27780
Number of extensions: 179051
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)