Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0393
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10790.1 68417.m01759 UBX domain-containing protein low simil...    49   1e-06
At5g36200.1 68418.m04364 F-box family protein contains Pfam PF00...    27   4.8  
At4g38250.1 68417.m05402 amino acid transporter family protein l...    27   6.4  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    27   6.4  
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-...    27   6.4  
At4g23890.1 68417.m03436 expressed protein hypothetical protein,...    27   8.5  

>At4g10790.1 68417.m01759 UBX domain-containing protein low
           similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1
           protein) {Homo sapiens}; contains Pfam profile PF00789:
           UBX domain
          Length = 480

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 33/63 (52%)
 Frame = +3

Query: 201 DQTDKILQFQDLTGIEDMSICRDVLQRHQWDLEVAIQEQLNIREGRXSVFATEARAPTVV 380
           D  DK+  FQ +TG+ED  +C ++LQ H WDLE+AI       +   S  A +       
Sbjct: 3   DTVDKLGYFQAITGLEDADLCTEILQAHGWDLELAI-SSFTSSDQDASSSAVDGGGNNRD 61

Query: 381 HDH 389
           HDH
Sbjct: 62  HDH 64


>At5g36200.1 68418.m04364 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (pir||T00841)
          Length = 471

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 20  NISFLIFKSLNIIAVCFSNQTQTRKISNIGLNFNFF 127
           N+SF I +  N++ V   +   TR I+NI  N  +F
Sbjct: 326 NVSFFIDEKKNVVVVLGKDVLNTRNIANIIGNDGYF 361


>At4g38250.1 68417.m05402 amino acid transporter family protein low
           similarity to lysosomal amino acid transporter 1 [Rattus
           norvegicus] GI:14571904; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 436

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 288 IGVSAKHLYILTCLQCQLSLEIVK 217
           +GVS+K LYI  C   QL L  +K
Sbjct: 168 LGVSSKSLYIWGCFPFQLGLNSIK 191


>At4g15180.1 68417.m02328 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 2326

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 307 FKNS*ILEKGGPLCLPQKLGH 369
           +K   +L  G PLCL QK GH
Sbjct: 826 YKKKIVLNDGFPLCLMQKSGH 846


>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 649

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 156 SGPMDLEDNALGLTQDQTDKILQFQDLTGIE-DMSICRDVLQRHQWDLEVAIQEQLN 323
           S  + ++   L L +++  K  QF ++ G+  D+++    L+R QW L+VAI   +N
Sbjct: 413 SNELQIQPEQLPLNKEEIIK--QFCEIVGLHPDVAVA--YLERCQWSLQVAIDYFMN 465


>At4g23890.1 68417.m03436 expressed protein hypothetical protein,
           Synechocystis sp., PIR:S76577
          Length = 250

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 228 EIVKFYRSDPGSNPKHCLQDPLAQ 157
           E+ +  +  PG NPK C+ +PL +
Sbjct: 218 ELERREKGPPGKNPKSCILEPLIE 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,945,173
Number of Sequences: 28952
Number of extensions: 163265
Number of successful extensions: 357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)