Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0392
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   7.0  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.2  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    25   9.2  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -3

Query: 274 ICYNLGLYATSSIGATSRPHTLQRSRVYPQEEIS------KNGISFILEY 143
           + Y   +YA   +      H L   RVY ++ I       KNGIS  +++
Sbjct: 203 LAYLYSMYAAEDVKTLIHQHILVNQRVYAEDVIEPKTFHYKNGISISMKF 252


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = -1

Query: 243  LRSVLRLDPILFKDPVSTLRKKYRKMELVSS*NILFCMFIRIPMRRYVSS 94
            +  + +L  +L+K  +  +     K    S   +L   F  +PM +Y+ S
Sbjct: 1029 VEGIYKLSELLYKGKIDPMNDSNNKTPNTSPAELLGIKFTTLPMAQYIHS 1078


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 560 VTAVGGAACTPWCCRV 513
           + A G +ACT WC R+
Sbjct: 273 LAAFGASACTRWCSRL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,449
Number of Sequences: 5004
Number of extensions: 42685
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)