Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0392
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1315 + 29270679-29270908,29270992-29271394,29271633-292717...    66   2e-11
08_02_1286 - 25882773-25883771                                         51   7e-07
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983...    45   4e-05
05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197...    44   1e-04
04_03_0642 + 18289461-18290897,18291586-18291666                       29   3.1  
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64...    29   4.1  

>06_03_1315 +
           29270679-29270908,29270992-29271394,29271633-29271796,
           29271943-29272013,29272360-29272559
          Length = 355

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 19/157 (12%)
 Frame = -1

Query: 639 VWQQFPERIVGYPARTHFWDESK--------GSWGYSSRWGSLYSMVLPGAAXVHRATLA 484
           VWQ  P  +VG+  R H+  +          GSW +S  W   YSMVL  A+  HR  L 
Sbjct: 190 VWQSAPSAMVGFVPRMHWLADPGSNAKEYRYGSW-WSVWWTGTYSMVLSKASFFHRQYLD 248

Query: 483 LYAASG-PALRQAVRRAHNCEDILLNCLVAHTTXXXXXXXXXXXXXXXXLH--------- 334
           LY     P++R  V    NCEDI ++ LVA+ T                           
Sbjct: 249 LYTIRMLPSIRDYVNENRNCEDIAMSFLVANVTGSPPIWVQGGHTEVPFRDVTAGRIFEI 308

Query: 333 -HKSLWSDPEHFVQRQSCLNTFATTWGYMPLLRSVLR 226
               + S   H +QR  CLNTF+  +G+MPL+ + ++
Sbjct: 309 GSSGISSLKGHDLQRSKCLNTFSAMYGHMPLVATTVK 345


>08_02_1286 - 25882773-25883771
          Length = 332

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
 Frame = -1

Query: 636 WQQF--PERIVGYPARTHFWDESKGSWGY--SSRWGSLYSMVLPGAAXVHRATLALYAAS 469
           WQQ   P  +VG+  R+H  D ++G W Y  ++R  + YSMVL     +    L  Y+ S
Sbjct: 147 WQQRARPGTLVGFFPRSHHLDLARGRWAYGAAARQQARYSMVLTKLLVLGAGLLREYSCS 206

Query: 468 GP--ALRQAVRRAHNCEDILLNCLVA 397
               A R  V R  NCEDIL+N + A
Sbjct: 207 PELAAARAVVDRERNCEDILMNFVAA 232


>03_05_0717 +
           27097367-27097621,27097744-27097866,27098136-27098303,
           27098393-27100072
          Length = 741

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
 Frame = -1

Query: 639 VWQQFPERIVGY-PARTHFWDESKGSWGYSSRWGSLYSMVLPGAAXV-HRATLALYAASG 466
           VW++ P+RI+GY P  +        +  Y+ + G  Y+MVL GAA + H      Y +  
Sbjct: 592 VWREHPDRIIGYYPRLSEGSPLEYRNERYARQQGG-YNMVLTGAAFMDHGLAFKKYWSKE 650

Query: 465 PAL-RQAVRRAHNCEDILLNCLVAHTT 388
             + RQ V    NCEDILLN L A+ +
Sbjct: 651 AEVGRQIVDSFFNCEDILLNFLFANAS 677


>05_06_0237 +
           26618195-26618425,26618518-26618640,26619569-26619736,
           26619824-26621497
          Length = 731

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
 Frame = -1

Query: 639 VWQQFPERIVGYPARTHFWDESKGSWGYSSRWGSLYSMVLPGAAXVHR--ATLALYAASG 466
           VW++ PER+VG+  R    D  +      +R    Y+++L GAA +    A    ++   
Sbjct: 582 VWREHPERMVGFYPRMIDGDPLQYRNERYARGKKGYNLILTGAAFMDSEFAFSKYWSQEA 641

Query: 465 PALRQAVRRAHNCEDILLNCLVAHTTXXXXXXXXXXXXXXXXLHHKSL---WSDPEHFVQ 295
              R  V +  NCED+L+N L A+ +                    S+       +H+  
Sbjct: 642 KEGRDYVHKNFNCEDLLMNFLYANASSSRTVEYVHPAWAIDTSKLSSVAISRDTQKHYDI 701

Query: 294 RQSCLNTFATTWGYMP 247
           R  CL  FA+ +G +P
Sbjct: 702 RTKCLAKFASIYGPLP 717


>04_03_0642 + 18289461-18290897,18291586-18291666
          Length = 505

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 335 ITSRCGVILNILFNDNHA*THLLQLGVICHFFDRCYVSTPYSSKIPC 195
           +T+R   + N++ N NH     LQ GV  +FF  C   +  S    C
Sbjct: 278 VTTRSSKVANLVSNSNHYELKGLQHGVFWNFFKLCAFGSVQSWSNSC 324


>06_01_0081 +
           646100-646346,646432-646848,647067-647170,648152-648352,
           649088-649798,649944-650674,650942-651017,651096-651182,
           651429-651517,651917-651973,652402-652510,652590-652649,
           652835-652919,653178-653242,653694-653753,653869-653913,
           654697-654800,654877-655099
          Length = 1156

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 625 PRTYCWVSS*NSLLGRIKGVMGLQQSVGQPVLHGA 521
           PR +C+V   +   G+ KGV G ++ +    LHG+
Sbjct: 197 PREFCYVMFTSGSTGKPKGVCGTEKGIEYLKLHGS 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,444
Number of Sequences: 37544
Number of extensions: 280930
Number of successful extensions: 746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)