Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0392
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54751| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   1e-28
SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)             48   5e-06
SB_24141| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  

>SB_54751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score =  123 bits (297), Expect = 1e-28
 Identities = 63/161 (39%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
 Frame = -1

Query: 639 VWQQFPERIVGYPARTHFWDESKGSWGYSSRWGSLYSMVLPGAAXVHRATLALYAASGP- 463
           VW+ FP+RIVG+P+R H+WDE +  W YSS   + +SMV+   A  HR    +Y  S P 
Sbjct: 32  VWRDFPQRIVGFPSRDHYWDEGQSRWVYSSMISNKFSMVMTSGAFYHRYYNYMYTHSLPK 91

Query: 462 ALRQAVRRAHNCEDILLNCLVAHTTXXXXXXXXXXXXXXXXLHHKSLWSD-PEHFVQRQS 286
            L + V R   CE I++N LVA                   +  K+  S     F  +Q 
Sbjct: 92  RLHRLVDRHPTCEHIVMNFLVADAIRLPPIKILPVKQYYEGMGKKARKSKLTAQFDHKQK 151

Query: 285 CLNTFATTWGYMPLLRSVLRLDPILFKDPVSTLRKKYRKME 163
           C+++    +GYMPL++S +R+DP+L+KDPVS LRK+YR +E
Sbjct: 152 CMDSLHDAFGYMPLIKSRVRMDPLLYKDPVSNLRKRYRLLE 192


>SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/95 (36%), Positives = 47/95 (49%)
 Frame = -1

Query: 462 ALRQAVRRAHNCEDILLNCLVAHTTXXXXXXXXXXXXXXXXLHHKSLWSDPEHFVQRQSC 283
           ++R+ +    NCEDI +N LV+H T                    SLWSD  HF +R  C
Sbjct: 404 SIREKIDEFMNCEDIAMNFLVSHITRKPPIKVTSRWTFVCSSCPVSLWSDKSHFEERHQC 463

Query: 282 LNTFATTWGYMPLLRSVLRLDPILFKDPVSTLRKK 178
           +N F   +GYMPLLR+  R D +LFK  +     K
Sbjct: 464 INYFEKVYGYMPLLRTQYRADSVLFKTRIPNTETK 498


>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
          Length = 497

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -1

Query: 636 WQQFPERIVGYPARTHFWDESKGSWGYSSRWGSLYSMVLPGAAXVHR 496
           W++FP+R+VG+P R H +D +     Y S W +  SMVL G A  H+
Sbjct: 416 WREFPDRLVGFPGRIHLYDNA-SKLKYDSEWTNDVSMVLTGVAFHHK 461


>SB_24141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 277 HICYNLGLYATSSIGATSRP-HTLQRSRVYPQEEISK 170
           ++C N  L +TSS+ A  R  H+LQ+ R  PQ++  K
Sbjct: 24  YLCKNHSLVSTSSLLAEIRQLHSLQQKRTRPQQKAKK 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,608,279
Number of Sequences: 59808
Number of extensions: 317850
Number of successful extensions: 688
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)