Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0392
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-8|CAB07245.1|  814|Caenorhabditis elegans Hypothetical pr...    92   4e-19
U94835-1|AAC47510.1|  814|Caenorhabditis elegans multiple exosto...    92   4e-19
AB077851-1|BAB83878.1|  814|Caenorhabditis elegans heparan sulfa...    92   4e-19
Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z92803-8|CAB07245.1|  814|Caenorhabditis elegans Hypothetical protein
            K01G5.6 protein.
          Length = 814

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 54/146 (36%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
 Frame = -1

Query: 639  VWQQFPERIVGYPARTHFWDESKGSWGYSSRWGSLYSMVLPGAAXVHRATLALYAASGPA 460
            VW++  +RIVG+PAR H       S  Y+S      SM+L GAA +H+  L  Y    PA
Sbjct: 657  VWRENRDRIVGFPARHHA--RYGDSMFYNSNHTCQMSMILTGAAFIHKNYLTAYTYEMPA 714

Query: 459  -LRQAVRRAHNCEDILLNCLVAHTTXXXXXXXXXXXXXXXXLHHKSLWSDPEHFVQRQSC 283
             +R+ V    NCEDI +N LV+H T                   +SL+ +  HF +R  C
Sbjct: 715  EIREHVNSIKNCEDIAMNYLVSHLTRKPPIKTTSRWTLKCPTCTESLYKEGTHFEKRHEC 774

Query: 282  LNTFATTWGYMPLLRSVLRLDPILFK 205
            +  F   +GY PL  S  R D ILFK
Sbjct: 775  MRLFTKIYGYNPLKFSQFRADSILFK 800


>U94835-1|AAC47510.1|  814|Caenorhabditis elegans multiple exostoses
            homolog 2 protein.
          Length = 814

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 54/146 (36%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
 Frame = -1

Query: 639  VWQQFPERIVGYPARTHFWDESKGSWGYSSRWGSLYSMVLPGAAXVHRATLALYAASGPA 460
            VW++  +RIVG+PAR H       S  Y+S      SM+L GAA +H+  L  Y    PA
Sbjct: 657  VWRENRDRIVGFPARHHA--RYGDSMFYNSNHTCQMSMILTGAAFIHKNYLTAYTYEMPA 714

Query: 459  -LRQAVRRAHNCEDILLNCLVAHTTXXXXXXXXXXXXXXXXLHHKSLWSDPEHFVQRQSC 283
             +R+ V    NCEDI +N LV+H T                   +SL+ +  HF +R  C
Sbjct: 715  EIREHVNSIKNCEDIAMNYLVSHLTRKPPIKTTSRWTLKCPTCTESLYKEGTHFEKRHEC 774

Query: 282  LNTFATTWGYMPLLRSVLRLDPILFK 205
            +  F   +GY PL  S  R D ILFK
Sbjct: 775  MRLFTKIYGYNPLKFSQFRADSILFK 800


>AB077851-1|BAB83878.1|  814|Caenorhabditis elegans heparan sulfate
            GlcNAc transferase-I/II protein.
          Length = 814

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 54/146 (36%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
 Frame = -1

Query: 639  VWQQFPERIVGYPARTHFWDESKGSWGYSSRWGSLYSMVLPGAAXVHRATLALYAASGPA 460
            VW++  +RIVG+PAR H       S  Y+S      SM+L GAA +H+  L  Y    PA
Sbjct: 657  VWRENRDRIVGFPARHHA--RYGDSMFYNSNHTCQMSMILTGAAFIHKNYLTAYTYEMPA 714

Query: 459  -LRQAVRRAHNCEDILLNCLVAHTTXXXXXXXXXXXXXXXXLHHKSLWSDPEHFVQRQSC 283
             +R+ V    NCEDI +N LV+H T                   +SL+ +  HF +R  C
Sbjct: 715  EIREHVNSIKNCEDIAMNYLVSHLTRKPPIKTTSRWTLKCPTCTESLYKEGTHFEKRHEC 774

Query: 282  LNTFATTWGYMPLLRSVLRLDPILFK 205
            +  F   +GY PL  S  R D ILFK
Sbjct: 775  MRLFTKIYGYNPLKFSQFRADSILFK 800


>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 257 VICHFFDRCYVSTPYSSKIPCL 192
           +I +FF +CY+S PY   I  L
Sbjct: 135 LISYFFPKCYISYPYQVSISLL 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,914,450
Number of Sequences: 27780
Number of extensions: 240597
Number of successful extensions: 547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)