Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0392
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s...    69   3e-12
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l...    44   9e-05
At1g80290.1 68414.m09400 glycosyltransferase family protein 47 s...    44   9e-05

>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
           similar to exostose-related protein 2, Homo sapiens,
           PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
           [GI:10443633]
          Length = 334

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
 Frame = -1

Query: 639 VWQQFPERIVGYPARTHFWDESKGSWGY-------SSRWGSLYSMVLPGAAXVHRATLAL 481
           VW+  P+ +VG+  R H+ ++S     Y       S  W   YSMVL  AA  H+  L+L
Sbjct: 182 VWESAPDTMVGFVPRVHWPEKSNDKANYYTYSGWWSVWWSGTYSMVLSKAAFFHKKYLSL 241

Query: 480 YAASGPA-LRQAVRRAHNCEDILLNCLVAHTTXXXXXXXXXXXXXXXXLHHKSLWSDPEH 304
           Y  S PA +R+   +  NCEDI ++ L+A+ T                    S+     H
Sbjct: 242 YTNSMPASIREFTTKNRNCEDIAMSFLIANATNAPAIWVKGKIYEIGSTGISSIGG---H 298

Query: 303 FVQRQSCLNTFATTWGYMPLLRSVLR 226
             +R  C+N F   +G MPL+ + ++
Sbjct: 299 TEKRTHCVNRFVAEFGKMPLVYTSMK 324


>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
           similarity to Exostosin-like 2, Homo sapiens
           [SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
          Length = 765

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
 Frame = -1

Query: 639 VWQQFPERIVGYPARTHFWDESKG-SWGYSSRWGSLYSMVLPGAAXVH-RATLALYAASG 466
           VW++ PER+VG+  R  F D++   S    +R    Y+M+L GAA +  R    +Y +  
Sbjct: 614 VWREHPERLVGFYPR--FVDQTMTYSAEKFARSHKGYNMILTGAAFMDVRFAFDMYQSDK 671

Query: 465 PAL-RQAVRRAHNCEDILLNCLVAHTT 388
             L R  V    NCEDILLN L A+ +
Sbjct: 672 AKLGRVFVDEQFNCEDILLNFLYANAS 698


>At1g80290.1 68414.m09400 glycosyltransferase family protein 47
           similar to exostosin, Homo sapiens [SP|O43909],
           [SP|Q16394]
          Length = 329

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = -1

Query: 639 VWQQFPERIVGYPARTHFWDESKGSWGYSSRWGSLYSMVLPGAAXVHRATLALYAASG-- 466
           VW+  P+R+VG   R+H +D     W Y+      YS+VL     + +  L  Y+  G  
Sbjct: 155 VWKSNPDRLVGTFVRSHGFDLQGKEWIYTVH-PDKYSIVLTKFMMMKQDYLFEYSCKGGV 213

Query: 465 --PALRQAVRRAHNCEDILLNCLVA 397
               +R  V +  NCEDIL+N + A
Sbjct: 214 EMEEMRMIVDQMRNCEDILMNFVAA 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,105,487
Number of Sequences: 28952
Number of extensions: 218270
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)