Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0391
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.074
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.40 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.074
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
 Frame = -3

Query: 457 PQRPQRAAPPSEARRVAGLLGPRLDGPYGLLPS--PSNMR-SLVLGLDQCMDCCT*SFIP 287
           PQ PQR +PP+ ++      GP   GP G  PS  PS M  S   G+ Q         + 
Sbjct: 31  PQAPQRGSPPNPSQ------GPPPGGPPGAPPSQNPSQMMISPASGIHQMQ-----QLLQ 79

Query: 286 NHCLKPIAIP--LRRHLSYRARLDGSH 212
            H L P  +   +++H  Y  +    H
Sbjct: 80  QHILSPTQLQSFMQQHSLYLQQQQQQH 106


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 144 DKNDGEKEAEMKFQKLKEAKEILCDP-SKRALYDKW 248
           +KN G  +  MK +K + A+E + DP  +   YD++
Sbjct: 145 EKNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEF 180


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/36 (19%), Positives = 21/36 (58%)
 Frame = +3

Query: 117 KILALQHHPDKNDGEKEAEMKFQKLKEAKEILCDPS 224
           K++ L+H   ++  +   ++K  ++K  +++  DP+
Sbjct: 653 KLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPN 688


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 140 VVLQGKYLIFCSYLLHS*VFIT 75
           V L GKYLIF   L+   + +T
Sbjct: 304 VPLLGKYLIFAMILVSISICVT 325


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 140 VVLQGKYLIFCSYLLHS*VFIT 75
           V L GKYLIF   L+   + +T
Sbjct: 304 VPLLGKYLIFAMILVSISICVT 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,357
Number of Sequences: 438
Number of extensions: 2489
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)