Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0389
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   2.5  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    26   3.3  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   4.4  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   4.4  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   5.8  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 439 LEREKLKTKLDSENPQDANMSEPSNKAESS-EEKLKA 546
           LE+EK+K K D EN + A     S   ES  E +LKA
Sbjct: 674 LEKEKIKKKFDRENEKLAAEDPKSVLPESELEVRLKA 710


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 439 LEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKA 546
           +E+++++ KLDS +P+    ++PSN       KL +
Sbjct: 308 VEQKQMQQKLDSMSPEWYQAADPSNGVVDGTPKLNS 343


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 394 IQFLKDNAKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEK 537
           I++ K  A   EDAR++REK K +  +E  ++A + E   +    +E+
Sbjct: 861 IEYEKSVAAKLEDARIQREKEKARRLAE--EEALLKEKQERERQLQEE 906


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = +1

Query: 127 GLTMSSWAENFTTAATWQLKHQIAYWKSKAKALEYENKLLHDIIKKNYTSDLPIQEQKVK 306
           GL  + +++  T    WQ   +   W+ + +    EN+ + +I K+ +TS +      + 
Sbjct: 578 GLLSAGFSQGKTNTNDWQ--DRATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHLS 635

Query: 307 KEQSL 321
            E+S+
Sbjct: 636 SERSI 640


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +1

Query: 61   TAQKNKQLGNKRDFQNLKRIHFGLTMSSWAENFTTAATWQLKHQIAYWKSKAKALEYENK 240
            T  ++K+   K D  N+++     T++  AE F     +     + +  SK  +  +EN+
Sbjct: 1122 TGVEHKEENKKYDNVNIQK-----TLAKCAEEFAEHTNFNKVELLDFVYSKLSSTIWENR 1176

Query: 241  LLHDIIK 261
              HD++K
Sbjct: 1177 EEHDLLK 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,294
Number of Sequences: 5004
Number of extensions: 30280
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)