Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0389
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 29 2.6
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 29 3.4
05_05_0077 + 22226326-22226441,22226527-22226601,22227619-222277... 28 4.5
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891 28 5.9
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 28 5.9
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 27 7.8
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 27 7.8
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 27 7.8
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 406 KDNAKFKED--ARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLK 543
KDN K KE E+EK K K D + E +K E EEK K
Sbjct: 232 KDNEKEKEQLMGTDEKEKEKEKEDENEEEKLEEEEKKDKEEKLEEKEK 279
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 427 EDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGK 558
E ERE+++ +LD+ N +A+ K ESSEE+ K L+ K
Sbjct: 518 EHMEKEREEMQRQLDTYNLDNASRDVHCLKGESSEEE-KGLHEK 560
>05_05_0077 +
22226326-22226441,22226527-22226601,22227619-22227781,
22227867-22228166
Length = 217
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 394 IQFLKDNAKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLK 543
+ L D A+ R E +KLK+ +E+ QD+ S + K+E +EK +
Sbjct: 83 VSILSDAARLLSQLRAEAQKLKS--SNESLQDSIKSLKAEKSELRDEKTR 130
>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
Length = 1274
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 542 FNFSSELSALLEGSDMFASWGFSESNL 462
F F S LSAL G D F GF+ +NL
Sbjct: 609 FLFISNLSALATGEDQFIYSGFNGANL 635
>03_06_0311 +
33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 424 KEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKA 546
KED +E E L+++ D + +EP N+ +S+ +A
Sbjct: 356 KEDEPVENENLESEFDVSKKESNGATEPGNEPVASKRPKRA 396
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 391 FIQFLKDNAKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKL 540
F +F + + K++ED + ++K+K KL+ + +D + + S K L
Sbjct: 389 FKEFERKDVKYREDLKHLKQKIK-KLEDKTEKDTSKIDESTKEVEESSSL 437
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 427 EDARL-EREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALY 552
ED L E+EKL++ +D+EN Q A + + S E+LKA +
Sbjct: 114 EDGYLVEQEKLRSTMDAENAQHAKLEA---QLSSDLEELKAAH 153
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 442 EREKLKTKLDSENPQDANMSEPSNKAESSEEKLK 543
E +KLK LD N + N+ N+ S +KLK
Sbjct: 815 EVDKLKHALDENNSEIENLKHTLNEKNSETDKLK 848
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.124 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,712,962
Number of Sequences: 37544
Number of extensions: 163947
Number of successful extensions: 417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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