Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0389
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25191| Best HMM Match : zf-B_box (HMM E-Value=1.1)                  29   2.0  
SB_38815| Best HMM Match : Laminin_II (HMM E-Value=1.3)                29   2.0  
SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41)                    29   2.0  
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  28   6.1  
SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)                28   6.1  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_11570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_37173| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)               27   8.0  
SB_3878| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  
SB_22348| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_25191| Best HMM Match : zf-B_box (HMM E-Value=1.1)
          Length = 282

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 430 DARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGKDW 564
           DA + R++ +      + + A+ S P N   S+ +  K LY KDW
Sbjct: 184 DATVIRDRAQIAFTHADLRSASQSAPRNGISSAAKAKKELYCKDW 228


>SB_38815| Best HMM Match : Laminin_II (HMM E-Value=1.3)
          Length = 303

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 430 DARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGKDW 564
           DA + R++ +      + + A+ S P N   S+ +  K LY KDW
Sbjct: 218 DATVIRDRAQIAFTHADLRSASQSAPRNGISSAPKAKKELYCKDW 262


>SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41)
          Length = 523

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 430 DARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGKDW 564
           DA + R++ +      + + A+ S P N   S+ +  K LY KDW
Sbjct: 184 DATVIRDRAQIAFTHADLRSASQSAPRNGISSAAKAKKELYCKDW 228


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 427 EDARLERE-KLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGK 558
           ED R  +E K K K + ++      S  SNK+  SEEK K+   K
Sbjct: 251 EDDRERKERKKKNKKEKKHKSKETSSSESNKSSDSEEKAKSKKNK 295


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 397 QFLKDNAKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKA 546
           Q +K NA+    + +  EKL+T    +       SE SN    +EEK  A
Sbjct: 568 QVVKKNAEVNAKSEMVVEKLETHASLDTKTIGEQSETSNVENETEEKTPA 617


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 424 KEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLK 543
           K+DAR  +   KTK      QD   + PS K ++S  + K
Sbjct: 657 KQDARPRQASRKTKTSKPQDQDKQAARPSCKTKTSNPQDK 696


>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
          Length = 405

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 475 ENPQDANMSEPSNKAESSEE 534
           ENP D+ +SEP+ +A+ SE+
Sbjct: 248 ENPVDSQLSEPAEQAQESEK 267


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +1

Query: 397  QFLKDNAKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAE-SSEEKLKALYGK 558
            +FL +  +  E ARL+RE+LK K + +    A +   + + + S+EE++  L+ +
Sbjct: 1043 RFLNERQRQAELARLKRERLKAKQEDKFDAAALVLGLAERHQASAEERMTTLFAR 1097


>SB_11570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 430 DARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGKDW 564
           DA + R++ +      + + A+ S P N   S+ +  K LY KDW
Sbjct: 215 DATVIRDRAQIAFTHADLRLASQSAPRNGISSAAKAKKELYCKDW 259


>SB_37173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 430 DARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGKDW 564
           DA + R++ +      + + A+ S P N   S+ +  K L+ KDW
Sbjct: 238 DATVIRDRAQIAFTHADLRSASQSAPRNGISSAAKAKKELHCKDW 282


>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
          Length = 1366

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 57  ENSTKKQTIR*QKRFSKSQTDTFRSYNVILGREFHNCSDLAIETPNRLLEVKSEGIGI*K 236
           EN++K      ++   +S+ D  +  N+       NCS++A ++  R  EV+ E   + K
Sbjct: 259 ENTSKAFPEEIKRNIDESEMDYDKGINLKQDEASTNCSEVATKSKKRKKEVEDENSSVKK 318

Query: 237 Q 239
           +
Sbjct: 319 K 319


>SB_3878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 391 FIQFL--KDNAKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEK 537
           FI FL  K   + KED   E E+++ + D+   ++    E +N+ E  EE+
Sbjct: 125 FITFLMVKRKLREKEDDNDEVEEIEKREDANEKEEIEEREDANEKEEIEER 175


>SB_22348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 391 FIQFLKDNAKFKEDARLEREKLKTKLDSENPQDANMSEPSN 513
           F     +  K +  A L++     K DSEN Q  N  EPSN
Sbjct: 103 FTVIYAEMGKAQYSAALDKLSAIQKKDSENHQTTNEEEPSN 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,137,597
Number of Sequences: 59808
Number of extensions: 206868
Number of successful extensions: 643
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)