Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0389
         (564 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          24   3.0  
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    23   5.2  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    23   6.9  

>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 142 SWAENFTTAATWQLKHQIAYWKSKAKALEYENKLLHDIIKKNYTSDLPIQEQKVK 306
           +W   + T    +LK ++   + ++K LE   + L + + KN+   +   E+K+K
Sbjct: 23  TWVMVYRTEKYQKLKGEV---EKQSKKLEKRKETLGESLDKNHKKKIERDEEKLK 74


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 463 KLDSENPQDANMSEPSNKAESSEEK 537
           KL ++   D+N S+PS+     EEK
Sbjct: 38  KLFTQGSADSNYSQPSSDLSLDEEK 62


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
            anion exchanger protein.
          Length = 1102

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 232  HIPMPSLLTSNKRFGVSIAKSLQ 164
            HIPMP L       GVS  K LQ
Sbjct: 932  HIPMPVLYGVFLYMGVSALKGLQ 954


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,586
Number of Sequences: 2352
Number of extensions: 7084
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)