Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0389
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.70 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    25   0.70 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.70 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 104 KISNGYISVLQCH 142
           +ISNGY  VL CH
Sbjct: 352 QISNGYTPVLDCH 364


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 104 KISNGYISVLQCH 142
           +ISNGY  VL CH
Sbjct: 63  QISNGYTPVLDCH 75


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 104 KISNGYISVLQCH 142
           +ISNGY  VL CH
Sbjct: 352 QISNGYTPVLDCH 364


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 481  PQDANMSEPSNKAESSEEKLKALYGKD 561
            P+D ++S  S + E+ ++++K L G D
Sbjct: 1489 PKDKSVSVLSRENEAGQKEVKVLLGSD 1515



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 472 SENPQDANMSEPSNKAESSEEKLK 543
           S+   ++N     N   SSEEKLK
Sbjct: 338 SKTAMNSNQIVSDNSLSSSEEKLK 361


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 163 TAATWQLKHQIAYWK 207
           TA+   ++H++AYW+
Sbjct: 186 TASDLDVEHRVAYWR 200


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 403 LKDNAKFKEDARLEREKLKTKLDSE 477
           L D    KED+   R++L+ +LDS+
Sbjct: 477 LGDGRNNKEDSEEFRQRLRKELDSK 501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,288
Number of Sequences: 438
Number of extensions: 2165
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)