Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0389
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60800.1 68418.m07628 heavy-metal-associated domain-containin...    30   1.2  
At2g29880.1 68415.m03628 hypothetical protein                          29   2.8  
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:...    29   2.8  
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil...    27   6.5  
At2g05180.1 68415.m00545 cytochrome P450 family protein similar ...    27   6.5  
At3g13960.1 68416.m01762 expressed protein identical to transcri...    27   8.7  
At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical ...    27   8.7  

>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 283

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 409 DNAKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKA 546
           D  K +E  +LE EK K K+D  +PQ     E  NK ++ E+K K+
Sbjct: 72  DPVKLRE--KLE-EKTKKKVDLVSPQPKKEKEKENKNKNDEDKKKS 114


>At2g29880.1 68415.m03628 hypothetical protein
          Length = 308

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 439 LEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYG 555
           L +EKL T+  S+  ++ + S+  N  ESSE+ L  + G
Sbjct: 191 LPKEKLPTRKRSKTNRNGDRSDSINHGESSEKVLSEMIG 229


>At2g20290.1 68415.m02370 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1493

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 418  KFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLK 543
            KF+E  ++  E+LK  LD+EN  D N+    +  E   +++K
Sbjct: 1004 KFEETKKISEERLKKALDAENKID-NLKTAMHNLEEKLKEVK 1044


>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar to
            SP|P25439 Homeotic gene regulator (Brahma protein)
            {Drosophila melanogaster}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 1064

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 406  KDNAKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGKD 561
            +D    K   + +R   KT++ + +  +A +SE   + E  EE+ K   GK+
Sbjct: 970  EDEDASKVSQKRKRTDTKTRMSNGSKAEAVLSESDEEKEEEEEERKEESGKE 1021


>At2g05180.1 68415.m00545 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max}
          Length = 442

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 109 DFENLFCYLIVCFFVLFSF 53
           DF+N F ++++C F LF +
Sbjct: 8   DFQNCFIFIVLCLFSLFCY 26


>At3g13960.1 68416.m01762 expressed protein identical to
           transcription activator GRL5 [Arabidopsis thaliana]
           GI:21539888 (unpublished); supporting cDNA
           gi|21539887|gb|AY102638.1|
          Length = 397

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 457 KTKLDSENPQDANMSEPS-NKAESSEEKLKALYGKDW 564
           ++ L + + QD N  E   + +ESS++ L   +G+DW
Sbjct: 338 RSVLANSSRQDQNQEEDEKDSSESSKKSLHHFFGEDW 374


>At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical to
           plastid heme oxygenase (HY1) [Arabidopsis thaliana]
           GI:4877362, heme oxygenase 1 [Arabidopsis thaliana]
           GI:4530591 GB:AF132475; annotation updated per Seth J.
           Davis at University of Wisconsin-Madison
          Length = 282

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 415 AKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGKD 561
           A+FK       EKL T L+    Q   + EP+   ++  + LK L  KD
Sbjct: 143 AEFKNTGLERAEKLSTDLEWFKEQGYEIPEPTAPGKTYSQYLKELAEKD 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,265,008
Number of Sequences: 28952
Number of extensions: 148844
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)