Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0388
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 0.76
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.00
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 4.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 4.0
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 5.3
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 5.3
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 7.0
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 7.0
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 7.0
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 7.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 9.3
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 25 9.3
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c... 25 9.3
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 0.76
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 72 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 218
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.00
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 416 FFQVLVPTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEY 240
F + PTH F +YL S LI + V + + H + + R + S +Y E+
Sbjct: 146 FMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEH 205
Query: 239 DFAIASVV 216
I ++
Sbjct: 206 GLFILDLI 213
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 293 RHRTARQQQAASNEYIEYDFA 231
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 73 NGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYSMY 252
+ S + S+ T SAT S A ++ +S+ NSTT A A S S+
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS 246
Query: 253 S 255
S
Sbjct: 247 S 247
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 346 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 245
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 424 SNIFSKYLYRRISFTNTCSKFRMVSISSLAE 332
S FS++ Y F NTC F + S E
Sbjct: 460 SKRFSRFYYGHYVFVNTCHNFFLTLYQSFTE 490
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 394 RISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSN 242
+ S + V S+L + +VL L P P G PA++TSN
Sbjct: 69 KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 39 SQKVEKPVLSGQRIKTRKRDE 101
+Q++++PV G IK K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.0 bits (52), Expect = 7.0
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
Frame = +3
Query: 78 IKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGEVIFD--V 251
+ ++K+D + Y G D LV A LDA +D + + Y E I D +
Sbjct: 376 LHSKKQDILKLYSDLGINDDLVVPFCEAASSLDA----IDDLNDYIHF-TYSEQIRDRAL 430
Query: 252 LIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLE--KMFE 425
L+ GL P GS E + ++ E + ++F V R +++E +
Sbjct: 431 LMGTGLRRPQGSKYSFFEKFRKSSLYNLVKEFGMSAKDF-SFNVAQGARLRFVEDNTLSP 489
Query: 426 EEMKKVLVYLKGXDPEQRXKLAR 494
EE+ + V + PEQ + AR
Sbjct: 490 EELSRTYVTNELSSPEQVLQKAR 512
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 40 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSG 159
V+R K + +RPE EM + + LWY WSG
Sbjct: 43 VKRKKQPARKQIETRPEYEMEPEQPGQVYN--LWYNKWSG 80
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 440 LFHFLFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDA 324
LFH+ + H FQVL H YL + +L G E A
Sbjct: 150 LFHYFYIHIFQVL------HLYLLASPTYIAMLAGNERA 182
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 70 VNGSRPEKEMRKRSMTRTVS 129
+N S+ EK++RKR+ R +S
Sbjct: 754 LNASKGEKDLRKRTQERLIS 773
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 404 LVPTHQFHEYLFEISHGVHILI 339
+V H F E F++S G HI++
Sbjct: 359 VVGGHAFEEQSFQMSQGAHIVV 380
>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
catalytic subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 410 QVLVPTHQFHEYLFEI 363
Q+ HQ HEYLF++
Sbjct: 13 QIAAFVHQIHEYLFQV 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,171
Number of Sequences: 5004
Number of extensions: 49182
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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