Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0386
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 210 1e-55
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.99
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 25 5.3
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 5.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 7.0
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 7.0
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 25 7.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 9.2
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 210 bits (512), Expect = 1e-55
Identities = 90/126 (71%), Positives = 114/126 (90%)
Frame = +2
Query: 149 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 328
++++KEWVPVTKLGRLV+ GKI +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86
Query: 329 KQTRAGQRTRFKAFVAIGDNNGHIGLGVMCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 508
KQTRAGQRTRFKAFV IGD++GH+GLG+ C+KEVATAIRGAII+ KLS++P+RRGYWG
Sbjct: 87 KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146
Query: 509 IGKPHT 526
+G PHT
Sbjct: 147 LGDPHT 152
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 0.99
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 146 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 21
++HDHG H + H DR + R R++R ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 152 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 274
+D+ EW P++ LV ++ E +++ K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 5.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 302 EVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVMCSKEVATAIRG-AIILAKLSV 475
E+ +++PVQK AGQ F + D G + + A ++G I+LA+L V
Sbjct: 123 EIDQVIPVQKILNAGQNLWFNEIILFEDELADNGKSMFDVR--ARVVQGHLILLARLVV 179
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 520 WLSDLVTPVTSSNW*NRQLSKDNSASN 440
++S++VTP T++NW N S +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.0 bits (52), Expect = 7.0
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +2
Query: 263 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVMCSKEVA- 433
E F G + E + ++P G TRF V D NG I G+ + E A
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437
Query: 434 TAIRGAIILAKLSVLPV 484
++ G L S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 439 GSGDFLTAHHTQTNMTVVVANGNKCLETCA 350
G+GD H +T T +V +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 258 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 368
+SR+ I S+ +++ S R KH+P+ ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -2
Query: 505 VTPVTSSNW*NRQLSKDNSASNGSGDFLTAHHTQTNMTVVVANGNKCLETCALSGTCLFL 326
VTP +SS+ + ++ +A + ++HT N +V C+ + C+FL
Sbjct: 255 VTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMALCIFL 313
Query: 325 Y 323
Y
Sbjct: 314 Y 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,275
Number of Sequences: 5004
Number of extensions: 40475
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -