Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0386
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   199   1e-51
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    30   0.89 
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    30   0.89 
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  199 bits (485), Expect = 1e-51
 Identities = 98/125 (78%), Positives = 106/125 (84%)
 Frame = +2

Query: 152 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 331
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110

Query: 332 QTRAGQRTRFKAFVAIGDNNGHIGLGVMCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 511
           QT AGQRTRFKAFVAIGD+ GH+GLGV CSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170

Query: 512 GKPHT 526
           G PHT
Sbjct: 171 GLPHT 175


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 357 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 181
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 180 VTGT 169
            + T
Sbjct: 582 QSNT 585


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 357 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 181
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 180 VTGT 169
            + T
Sbjct: 582 QSNT 585


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 493 TSSNW*NRQLSKDNSASNGSG 431
           TS+NW N QL   NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 373 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 287
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 373 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 287
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,668,023
Number of Sequences: 27780
Number of extensions: 239722
Number of successful extensions: 774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)