Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0378
         (344 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   2.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   2.0  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   4.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   8.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   8.2  

>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 93  PVFLSQADEEQQMEWLPRAWNCNII 167
           PV L+   E Q  +W  +  NC++I
Sbjct: 75  PVGLAFDIERQTCDWKTKVNNCDVI 99


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +1

Query: 253 SSCCTVPTVTSY---KWWPGA 306
           +SC +VPT  SY    ++PGA
Sbjct: 103 TSCSSVPTTASYGSDLYFPGA 123


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 116 RRTADGMASSSL 151
           +RT DGMA+S L
Sbjct: 228 KRTLDGMAASKL 239


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 57  GTPFALHFMMFLPVFLSQADEEQQMEWL 140
           G P  + F++F   FL+ +      +WL
Sbjct: 561 GPPLVIPFLLFGGFFLNVSSIPIYFKWL 588


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 57  GTPFALHFMMFLPVFLSQADEEQQMEWL 140
           G P  + F++F   FL+ +      +WL
Sbjct: 561 GPPLVIPFLLFGGFFLNVSSIPIYFKWL 588


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,766
Number of Sequences: 336
Number of extensions: 1655
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)