Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0378
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    24   5.8  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    24   5.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    24   7.6  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    24   7.6  

>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 100 NTGKNIMKCSAKGVPSRETTKLSNVVS 20
           N  KN+ KCSA G PS   +K+S V+S
Sbjct: 376 NAVKNL-KCSANGTPS--GSKISQVLS 399


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 259 CCTVPTVTSYKWWPGALGHTANY 327
           C T+P+V S   WP +  H   Y
Sbjct: 87  CSTLPSVKSTLIWPASETHVRKY 109


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 165 IGSYAQTELGHGTFIRGLETTATYDAXTKEFVLHSXNSNIIQVVARG 305
           +GS AQ  L  G  +  LE T+   +  +E+V    N ++  +++ G
Sbjct: 14  LGSLAQKRLCRGVKLNKLEATSLIASQIQEYV-RDGNHSVADLMSLG 59


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 189 ALSEHNYRLYCNSKLEEAIPSAVLRQPDLRTQVKTS*SAAQRE 61
           A +     +Y     + A+P+AV    D+ T    S SA +RE
Sbjct: 97  AYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVERE 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,854
Number of Sequences: 5004
Number of extensions: 26013
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)