Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0378
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 91 2e-19
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 56 6e-09
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 47 3e-06
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 30 0.42
11_06_0401 - 23139276-23140304 30 0.56
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 29 0.98
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 27 3.9
06_01_0129 + 1009097-1009681 27 5.2
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 27 5.2
02_05_0192 + 26602247-26602617,26602701-26603016 27 5.2
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 26 6.9
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 26 6.9
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029... 26 6.9
11_04_0171 + 14471717-14472124 26 9.1
10_08_0552 - 18714062-18714191,18714288-18714565,18714921-187149... 26 9.1
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 26 9.1
01_07_0382 + 43188478-43190919 26 9.1
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 91.5 bits (217), Expect = 2e-19
Identities = 45/86 (52%), Positives = 56/86 (65%)
Frame = +3
Query: 12 TDVLTTLLNFVVSREGTPFALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTEL 191
T+ LL V + G LH+ MF+P Q EEQQ +WLP A+ IIG YAQTEL
Sbjct: 87 TEEEANLLRLYVDQPGY-VDLHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTEL 145
Query: 192 GHGTFIRGLETTATYDAXTKEFVLHS 269
GHG+ ++GLETTAT+D T EFV+HS
Sbjct: 146 GHGSNVQGLETTATFDPKTDEFVIHS 171
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 238 TLXPKSSCCTV--PTVTSYKWWPGALGHTANYCVVVA 342
T PK+ + PT+TS KWWPG LG + + VV A
Sbjct: 159 TFDPKTDEFVIHSPTLTSSKWWPGGLGKASTHAVVYA 195
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 56.4 bits (130), Expect = 6e-09
Identities = 27/82 (32%), Positives = 44/82 (53%)
Frame = +3
Query: 72 LHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYDAXTK 251
+HF ++ + +WL N I G ++ TELGHG+ +RG+ET ATYD T+
Sbjct: 160 VHFFLWGSAIKFLGTKRHHDKWLSDTENYVIKGCFSMTELGHGSNVRGIETVATYDIKTR 219
Query: 252 EFVLHSXNSNIIQVVARGIGSH 317
EFV+++ + + G +H
Sbjct: 220 EFVINTPCESAQKYWIGGAANH 241
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +3
Query: 153 NCNIIGSYAQTELGHGTFIRGLETTATYDAXTKEFVLHSXNSNIIQVVARGIGSHG 320
N + G +A TEL HG+ ++ L+TTAT+D T EF++++ N I+ HG
Sbjct: 182 NLDYPGCFAMTELHHGSNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGNAALHG 237
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 30.3 bits (65), Expect = 0.42
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 117 EEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTAT 233
E Q+ ++LP +G +A TE HG+ L TTAT
Sbjct: 148 EVQKQKYLPSLAQLTAVGCWALTEPNHGSDASSLITTAT 186
>11_06_0401 - 23139276-23140304
Length = 342
Score = 29.9 bits (64), Expect = 0.56
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 17 CTHNVAQFRGLPRRNSLCAALHDVFTCVLKSG 112
C V + G P ++LC HD+F C+L +G
Sbjct: 162 CDVTVVKRDGPPTMSTLCPVEHDMFRCLLDTG 193
>08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 29.1 bits (62), Expect = 0.98
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 296 HHLYDVTVGTVQHELFGXSVIRGGRL*TPNKRPVPKLCL 180
H L D T G + H G ++ GR P KRPV L L
Sbjct: 1312 HQLEDKTGGLIIHRHGGQLILYRGRHYNPKKRPVIPLML 1350
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 147 AWNCNIIGSYAQTELGHGTFIRGLETTATYDAXTKEFVLHSXNSNIIQVVARGIGSH 317
AWNC ++G Y Q + + F RG+ + A E H+ N++ ++ V I SH
Sbjct: 200 AWNCKVVG-YLQRKKIYCLF-RGIIISIPQTARNLE---HNNNTSALEQVLMLIASH 251
>06_01_0129 + 1009097-1009681
Length = 194
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 296 GPGHWVTRLITAWLWR 343
G G W RL+ AW WR
Sbjct: 121 GRGSWRRRLLAAWWWR 136
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 16 MYSQRCSISWSPAKELPLRCTS*C 87
M+ QRC ++W ++ PL C C
Sbjct: 401 MFHQRCLVAWLRSRVTPLLCCPEC 424
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 296 GPGHWVTRLITAWLWR 343
G G W RL+ AW WR
Sbjct: 72 GRGSWRRRLLAAWWWR 87
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 66 FALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTF 206
F +F +++ LSQ +E+ W C +GSY + TF
Sbjct: 440 FGGNFKVWVQSMLSQPSDEKNQS----GWRCQSVGSYKNKPMTAATF 482
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = +1
Query: 232 RMTLXPKSSCCTVPTVTSY-KW---WPGAL 309
R L ++CC P+VT Y +W WP AL
Sbjct: 281 RFGLPASTACCGSPSVTDYARWLFCWPCAL 310
>04_03_0389 -
15302079-15302120,15302545-15302634,15302718-15302983,
15303196-15303883
Length = 361
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 83 HEVQRKGSSFAGDHEIEQRCEYIR 12
HEVQ K S H +E C Y +
Sbjct: 252 HEVQGKNGSKMSKHGVEMHCSYCK 275
>11_04_0171 + 14471717-14472124
Length = 135
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/26 (57%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = -3
Query: 117 RQPDLRTQVKTS*SAA-QREFLRGRP 43
R+PDLR + + S SAA QR++L GRP
Sbjct: 56 RRPDLRKKERISLSAALQRDYL-GRP 80
>10_08_0552 -
18714062-18714191,18714288-18714565,18714921-18714968,
18715222-18715308,18715522-18715634,18717140-18717349,
18717368-18717434
Length = 310
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 200 PVPKLCLSITTDYIAIPSSRKPFHLLFFVSL 108
P+P + L +TTD + I S PF + +S+
Sbjct: 206 PLPHIFLLVTTDVLTIKSKVSPFPSISAMSI 236
>04_03_0517 +
16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 44 GLPRRNSLCAALHDVFTCVLKSG*RRTADGMASS 145
G N+ + H VFTCV+KS + DG S+
Sbjct: 280 GATSANADSSRSHCVFTCVIKSESKNLEDGSNST 313
>01_07_0382 + 43188478-43190919
Length = 813
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 17 CTHNVAQFRGLPRRNSLCAALHDVF 91
C+H RGL S+C AL D++
Sbjct: 462 CSHGSVIIRGLASETSICNALIDMY 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,225,777
Number of Sequences: 37544
Number of extensions: 195670
Number of successful extensions: 403
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -