Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0378
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)         91   2e-19
SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   4e-06
SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)         42   1e-04
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   1e-04
SB_28072| Best HMM Match : VWA (HMM E-Value=0)                         33   0.062
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.58 
SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)                     28   1.8  
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_45136| Best HMM Match : EGF_CA (HMM E-Value=8.7e-36)                27   4.1  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   4.1  
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          26   9.4  
SB_5577| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.4  
SB_5569| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.4  

>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 41/69 (59%), Positives = 51/69 (73%)
 Frame = +3

Query: 63  PFALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYDA 242
           P  LH +MF+P       +EQQ +WLP A    I+G++AQTELGHGTF+RGLETTATYD 
Sbjct: 134 PSDLHRVMFMPTIKLMGTKEQQEKWLPLAEMHQILGTFAQTELGHGTFVRGLETTATYDK 193

Query: 243 XTKEFVLHS 269
            T++FVLHS
Sbjct: 194 QTQQFVLHS 202



 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +1

Query: 271 PTVTSYKWWPGALGHTANYCVVVA 342
           P++T+ KWWPG LGH+ NYC+VVA
Sbjct: 203 PSLTASKWWPGNLGHSTNYCIVVA 226


>SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +3

Query: 63  PFALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGH 197
           P  L+ +MF+P   +   + QQ +W+P A +  I+G+YAQTE+GH
Sbjct: 123 PTLLNDLMFIPTIKTLGTKRQQEKWIPLAKSYQILGTYAQTEMGH 167


>SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)
          Length = 647

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +3

Query: 60  TPFALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYD 239
           T   + F +F    L    E    + L    +   +G +  TELG+G     +ETTATYD
Sbjct: 135 TKMTVQFNLFGGTVLKLGTERHHSKLLKGIDSLEDVGCFGLTELGYGNNAVQMETTATYD 194

Query: 240 AXTKEFVLHSXNS 278
             T+EF++++ ++
Sbjct: 195 NETQEFIVNTPST 207


>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = +3

Query: 60  TPFALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYD 239
           T   + F +F    L    E    + L    +   +G +  TELG+G     +ETTA YD
Sbjct: 156 TKMTVQFNLFGGTVLKLGTERHHSKLLKGIDSLQEVGCFGLTELGYGNNAVQMETTAVYD 215

Query: 240 AXTKEFVLHS 269
             TKEFV+++
Sbjct: 216 KETKEFVVNT 225


>SB_28072| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2979

 Score = 33.1 bits (72), Expect = 0.062
 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -1

Query: 203 RPVPKLCLSITT-DYIAIPSSRKPFHLL 123
           RPVPK+ + +T  D +AIP SR+P+ +L
Sbjct: 302 RPVPKIAIMLTKGDNLAIPGSRRPYAIL 329


>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 19   YSQRCSISWSPAKELPLRCT 78
            ++ RC++ W P K L +RCT
Sbjct: 981  FTMRCTLPWPPNKRLTMRCT 1000


>SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)
          Length = 403

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 247 PKSSCCTVPTVTSYKWWPG-ALGH 315
           P+S+CC+ P  T+ +WW G  +GH
Sbjct: 379 PESTCCSSPDATT-QWWLGHEVGH 401


>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +2

Query: 32  AQFRGLPRRNS-LCAALHDVFTCVLKSG*R-RTADGMASSSLELQYNR 169
           AQ +  P  N   C  LHD F C   SG R  T  G A   +E    R
Sbjct: 436 AQCKHAPCHNGGTCTELHDGFQCTCSSGYRGNTCKGDAEYGIEAAQKR 483


>SB_45136| Best HMM Match : EGF_CA (HMM E-Value=8.7e-36)
          Length = 123

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 17 CTHNVAQFRGLPRRNSLCAALHDVFTC 97
          CT    Q R    RN+ CA  H  FTC
Sbjct: 5  CTTTSLQHRDNCHRNATCANTHGSFTC 31


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 17 CTHNVAQFRGLPRRNSLCAALHDVFTC 97
          CT    Q R    RN+ CA  H  FTC
Sbjct: 5  CTTTSLQHRDNCHRNATCANTHGSFTC 31


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 102 LSQADEEQQMEWLPRAWNCNI 164
           LS  D  +QMEWLPR+   N+
Sbjct: 549 LSVDDSGRQMEWLPRSLPYNV 569


>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 290 SGGPGHWVTR 319
           SGGP HWVTR
Sbjct: 960 SGGPQHWVTR 969


>SB_5577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 308 NAPGHHLYDVTV--GTVQHELFGXSVIRGGRL 219
           NAP   L  +T   G  +H++ G  VIRGG++
Sbjct: 172 NAPAEPLAPITEEEGRSEHKIGGSLVIRGGKM 203


>SB_5569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 308 NAPGHHLYDVTV--GTVQHELFGXSVIRGGRL 219
           NAP   L  +T   G  +H++ G  VIRGG++
Sbjct: 41  NAPAEPLAPITEEEGRSEHKIGGSLVIRGGKM 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,458,902
Number of Sequences: 59808
Number of extensions: 215197
Number of successful extensions: 629
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)