Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0378
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   1.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.2  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 262 CTVPTVTSYKWWPGALGHTANYCV 333
           C  PTV S  +W G      N C+
Sbjct: 38  CIHPTVFSVLFWLGYCNSAINPCI 61


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 262 CTVPTVTSYKWWPGALGHTANYCV 333
           C  PTV S  +W G      N C+
Sbjct: 486 CIHPTVFSVLFWLGYCNSAINPCI 509


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 119 RTADGMASSSLELQYNR*LCSDRAWARDVY 208
           R  D M S +    YN  L SD A + +VY
Sbjct: 76  RRTDSMDSQNSASTYNSFLSSDSASSGNVY 105


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 108 QADEEQQMEWLPRAWNCNIIGSYAQTELG 194
           Q  ++QQ     + +   I+G Y Q + G
Sbjct: 234 QNQQQQQQPLTQQQYQQQIVGKYLQQQAG 262


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 156 CNIIGSYAQTELGHGTFIRGLETTATY 236
           CN   +Y   ELG+G  +   E   ++
Sbjct: 202 CNDAFAYMSDELGYGLIVYSWEQNRSW 228


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 80  HDVFTCVLKSG 112
           +DV TCVLK G
Sbjct: 162 YDVQTCVLKLG 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,702
Number of Sequences: 438
Number of extensions: 2095
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)