Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0378
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac...    85   2e-17
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil...    84   3e-17
At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong simil...    54   2e-08
At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to ac...    53   4e-08
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    48   2e-06
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    29   0.63 
At1g54110.1 68414.m06168 cation exchanger, putative (CAX10) Ca2+...    29   0.63 
At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related...    28   1.9  
At3g55600.1 68416.m06175 expressed protein predicted proteins, A...    27   2.5  
At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related...    27   2.5  
At4g23680.1 68417.m03409 major latex protein-related / MLP-relat...    26   5.9  
At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex pr...    26   7.7  

>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
          Length = 675

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 40/80 (50%), Positives = 51/80 (63%)
 Frame = +3

Query: 72  LHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYDAXTK 251
           LH+ MF+P    Q  EEQQ +WL  A    IIG YAQTELGHG+ ++GLETTAT+D  T 
Sbjct: 101 LHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD 160

Query: 252 EFVLHSXNSNIIQVVARGIG 311
           EFV+H+      +    G+G
Sbjct: 161 EFVIHTPTQTASKWWPGGLG 180



 Score = 35.5 bits (78), Expect = 0.010
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 238 TLXPKSSCCTV--PTVTSYKWWPGALGHTANYCVVVA 342
           T  PK+    +  PT T+ KWWPG LG  + + VV A
Sbjct: 154 TFDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYA 190


>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
           similarity to acyl-CoA oxidase [Arabidopsis thaliana]
           GI:3044214
          Length = 664

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 38/80 (47%), Positives = 51/80 (63%)
 Frame = +3

Query: 72  LHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYDAXTK 251
           LH+ MF+P    Q  E+QQ +WL  A    IIG YAQTELGHG+ ++GLETTAT+D  T 
Sbjct: 101 LHWGMFVPAIKGQGTEQQQQKWLSLATKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD 160

Query: 252 EFVLHSXNSNIIQVVARGIG 311
           +F++HS      +    G+G
Sbjct: 161 QFIIHSPTQTSSKWWPGGLG 180



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 238 TLXPKSSCCTV--PTVTSYKWWPGALGHTANYCVVVA 342
           T  PK+    +  PT TS KWWPG LG  + + V+ A
Sbjct: 154 TFDPKTDQFIIHSPTQTSSKWWPGGLGKVSTHAVIYA 190


>At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong
           similarity to acyl-CoA oxidase ACX3 GI:8163758 from
           [Arabidopsis thaliana]
          Length = 675

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 24/66 (36%), Positives = 39/66 (59%)
 Frame = +3

Query: 72  LHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYDAXTK 251
           +HF+++         +    +WL    +  + G +A TELGHGT +RG+ET  TYD  T+
Sbjct: 152 VHFLLWGNAVKFFGTKRHHEKWLKDTEDYVVKGCFAMTELGHGTNVRGIETVTTYDPTTE 211

Query: 252 EFVLHS 269
           EFV+++
Sbjct: 212 EFVINT 217


>At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to
           acyl-CoA oxidase ACX3 [Arabidopsis thaliana] GI:8163758,
           GI:8515709
          Length = 675

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 25/82 (30%), Positives = 43/82 (52%)
 Frame = +3

Query: 72  LHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYDAXTK 251
           +HF ++         +    +WL    +  + G +A TELGHG+ +RG+ET  TYD  T+
Sbjct: 152 VHFFLWGNAVKFFGTKRHHEKWLKNTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTE 211

Query: 252 EFVLHSXNSNIIQVVARGIGSH 317
           EFV+++   +  +    G  +H
Sbjct: 212 EFVINTPCESAQKYWIGGAANH 233


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = +3

Query: 153 NCNIIGSYAQTELGHGTFIRGLETTATYDAXTKEFVLHSXNSNIIQVVARGIGSHG 320
           N +  G +A TEL HG+ ++GL+TTAT+D    EFV+ + N   I+        HG
Sbjct: 176 NLDYTGCFAMTELHHGSNVQGLQTTATFDPLKDEFVIDTPNDGAIKWWIGNAAVHG 231


>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 117 EEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTAT 233
           E Q+ ++LP     N +  +A TE  +G+   GL TTAT
Sbjct: 153 EAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTAT 191


>At1g54110.1 68414.m06168 cation exchanger, putative (CAX10)
           Ca2+:Cation Antiporter (CaCA) Family member
           PMID:11500563
          Length = 236

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 9   KTDV-LTTLLNFVVSREGTPFALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQT 185
           KT++    LL+   +++     +H++  L   L Q  EE+ +E LPR  N  +   Y + 
Sbjct: 5   KTEINFMRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTLEGLPRVTNAKVNEYYEKI 64

Query: 186 E 188
           E
Sbjct: 65  E 65


>At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related
           protein (PAKRP1)
          Length = 1292

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 59  NSLCAALHDVFTCVLKSG*RRTADGMAS 142
           N+  +  H VFTCV++S  +  ADG++S
Sbjct: 290 NTESSRSHCVFTCVVESRCKNVADGLSS 317


>At3g55600.1 68416.m06175 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 240

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 6   TKTDV-LTTLLNFVVSREGTPFALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQ 182
           +KT++ L  LL+   +++     +H++  L   L Q  EE+  E LPR     +   Y +
Sbjct: 5   SKTEINLRRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTPEGLPRVTKAKVNEYYEK 64

Query: 183 TE 188
            E
Sbjct: 65  IE 66


>At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related
           protein, putative similar to kinesin like protein
           GB:CAB10194 from [Arabidopsis thaliana]
          Length = 1313

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 59  NSLCAALHDVFTCVLKSG*RRTADGMAS 142
           N+  +  H VFTCV++S  +  ADG++S
Sbjct: 295 NAESSRSHCVFTCVVESHCKSVADGLSS 322


>At4g23680.1 68417.m03409 major latex protein-related / MLP-related
           low similarity to major latex protein {Papaver
           somniferum}[GI:294060] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 151

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 311 PNAPGHHLYDVTVGTVQHELFG 246
           P+A GHH+ +VTV   +H+  G
Sbjct: 32  PDAIGHHIQNVTVHEGEHDSHG 53


>At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex
           protein, putative similar to iron-sulfur cluster
           assembly complex ISCU1 (GI:11545705) [Homo sapiens];
           nifU protein homolog YPL135w (GI:15619823)
           [Saccharomyces cerevisiae] PIR2:S69049
          Length = 167

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -3

Query: 255 TLWXQRHTWRSSLDPE*TSRAQALSEHNYRLYCNSKLEEAIPSAVLRQPDLRTQVKTS*S 76
           T W +       L  + T  A+ LS    +L+C+   E+AI +AV    + R  VKT+ +
Sbjct: 101 TEWVKGKAMEDVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYKEKR--VKTNGA 158

Query: 75  AAQRE 61
           AA  E
Sbjct: 159 AAAGE 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,841,365
Number of Sequences: 28952
Number of extensions: 147628
Number of successful extensions: 371
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)