Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0377
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 53 3e-08
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 35 0.010
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 30 0.22
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 29 0.39
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 28 1.2
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 28 1.2
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 27 2.1
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 26 3.6
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 4.8
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 26 4.8
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 26 4.8
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 8.4
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ... 25 8.4
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 25 8.4
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 53.2 bits (122), Expect = 3e-08
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = +2
Query: 188 YLKHLMVEHENLLSKMKKSSEEARRLQEIKPIVNVLEQRIALYDSIESLKELNKKEGDDS 367
YL+ V +++ S M ++ A+R+ ++ + N + +L + I LK++ +E D +
Sbjct: 48 YLQFHQVNNKDQ-SAMTNDTDLAKRIARLRRVHNAYSKFKSLSEQISDLKQMEAQESD-A 105
Query: 368 EIKKM-IKEEAAIYLKRXXXXXXXXXXXXXXXXXTEGGVLLELTAGAGGQEAMLFAKELL 544
E+K M + E I K L+E+ G GG EA +FA EL+
Sbjct: 106 EVKMMAVTEINEISNKIPKSIEDLENTLLPQADSYALPALIEIRPGVGGTEAAIFANELV 165
Query: 545 NMYQSYAINKGW 580
MY YA KGW
Sbjct: 166 EMYFQYANFKGW 177
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 34.7 bits (76), Expect = 0.010
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 9/64 (14%)
Frame = +2
Query: 215 ENLLSKMK-KSSEEARRLQEIKPIVN-------VLEQRI-ALYDSIESLKELNKKEGDDS 367
EN++S +K K SEE+ RLQE++ +N L +RI A D + S++ +NK + ++
Sbjct: 798 ENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESINKNQANEL 857
Query: 368 EIKK 379
++ K
Sbjct: 858 KLAK 861
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +2
Query: 191 LKHLMV--EHENLLSKMKKSSEEARRLQEIKPIVNVLEQRIALYDSIESLK 337
+KH++ H NL+S+ + S+ +A+ + +KPI++ QR L DSI SL+
Sbjct: 38 IKHILKVQRHFNLISEDELSARQAKFEEIVKPILSKAFQR--LEDSISSLQ 86
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 29.5 bits (63), Expect = 0.39
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 257 RRLQEIKPIVNVLEQRIALYDSIESLKELNKKEGDDSEIKKMIK 388
+R QE++ + E+R AL ++E KELNK +DS+++K K
Sbjct: 15 KRNQELQE-AKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYK 57
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/67 (22%), Positives = 35/67 (52%)
Frame = +2
Query: 158 MNLSDPAIQTYLKHLMVEHENLLSKMKKSSEEARRLQEIKPIVNVLEQRIALYDSIESLK 337
+N+S+ AI M++ ++ L+ + +E L++I+P V + + + Y++ +
Sbjct: 410 LNISEDAISVVFLKQMLQEKSFLALKQMRNEIG--LKDIEPKVLIDCLKTSFYENFRAAS 467
Query: 338 ELNKKEG 358
+NK G
Sbjct: 468 NMNKNRG 474
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 200 LMVEHENLLSKMKKSSEEARRLQEIKPIVNVLEQRIALYDSIESLKELN-KKEGDDSEIK 376
L++ + K+K+ EEARR +E + V + Q+ +E K + + DD E
Sbjct: 167 LVLARKEAKRKLKEKEEEARRQKEQQQGVVQVRQQKEYLKELERQKTVPLARYEDDPEYN 226
Query: 377 KMIKEEA 397
K +KE +
Sbjct: 227 KELKERS 233
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +2
Query: 122 LLHFRRHCSHNIMNLSDPAIQTYLKHLMVEHENLLSKMKKSSEEARRLQEIKPI 283
LL+ R CS ++ +L+ ++ ++ +E++N LSK+ + +RRL+ + I
Sbjct: 790 LLNGRMICSFSVDSLNTADLKMLMQ---MEYDNYLSKLSNIAGSSRRLKNSRAI 840
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 493 NCRSWRARSDVICKRTLEHVPVLC 564
N WRA S +I +R L H+ + C
Sbjct: 234 NIHIWRACSSLIAQRKLSHILIEC 257
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 122 LLHFRRHCSHNIMNLSDPAIQTYLKHLMVEHENL 223
L+ FR HCS + +L A+ KH+ + E++
Sbjct: 699 LVRFRNHCSDYLSDLCRTAVLKEYKHVNEDTEDV 732
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = +2
Query: 209 EHENLLSKMKKSSEEARRLQEIKPIVNVLEQRIALYDSIESLKELNKKEGDDSEIKKMIK 388
+ E +K EEA Q + ++ E+ YDS+E K+ N+++ +++ + +
Sbjct: 71 DSERFAKLARKRREEAFNFQRKSMVDDLRERERQFYDSLE--KKENERDRLQEKLRALQE 128
Query: 389 EEAAIYLKR 415
E A + +R
Sbjct: 129 ESANLRRQR 137
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +2
Query: 77 PKLLFLRSFLNSERQLLHFRRHCSHNIMNLSDPAIQTYLKHLMVEHENLLSKMKKSSEEA 256
PK+ + ++E + H++RH + + D +IQ+YL E E L ++ +++A
Sbjct: 254 PKIASANAGSSNEISIPHYQRHKKSHKGAIQDSSIQSYLD----EEEKLSRELDHKTKDA 309
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 209 EHENLLSKMKKSSEEARRLQEIKP-IVNVLEQRIALYDSIESLKELNKKEGDDSEIKKMI 385
EH+ L ++ + E++ + N+ + A+ S ++L +NK + D +KK +
Sbjct: 34 EHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTL--INKVKAQDELLKKKV 91
Query: 386 KEEAAI 403
KE A+
Sbjct: 92 KELTAM 97
>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 137 RHCSHNIMNLSDPAIQTYLKHLMVEHENLLSKMKKSSEEA 256
R CS + + L + IQ LKH + E EN++ + E A
Sbjct: 201 RTCSSSAVTLKN-GIQQMLKHYIPEVENVVQVLDPEEEVA 239
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = +2
Query: 224 LSKMKKSSEEARRLQEIKPIVNVLEQRIALYDSIESLKELNKKEGDDSEIKKMIKE 391
LSK+ +S+++ + + KP++N LE A I++ + L EG+ +I + +E
Sbjct: 43 LSKLASTSKDSEVVAQGKPLLNDLE---AFKSDIKNDRPLVPLEGEGQDIVEYNEE 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,967
Number of Sequences: 5004
Number of extensions: 33322
Number of successful extensions: 141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -