Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0377
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        33   0.18 
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     33   0.18 
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        31   0.93 
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 29   3.8  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        28   6.6  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        28   6.6  
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)                     27   8.7  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    27   8.7  
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_11927| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_4245| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
 Frame = +2

Query: 119 QLLHFRRHCSHNIMNLSDPAIQTYL-KHLMVEHENLLSKMKKSSEEARRLQEIKPIVNVL 295
           QL + +      I+NL +   +  L K ++ + +  +S +   SE  R   E++ I  + 
Sbjct: 587 QLENKQSSLKEEIVNLKEQLSRALLDKEVLEQEKGHVSDVLSKSEVQRAELELE-IGKMK 645

Query: 296 EQRIALYDSIESLKELNKKEGDDS-EIKKMIKEEAA 400
            + IAL D++  L+ LN+  G D  E+ K+I++  A
Sbjct: 646 SEEIALRDALVKLQSLNEGLGQDKLELNKIIRQMEA 681


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
 Frame = +2

Query: 104  LNSERQLLHFRRH-CSHNIMNL-SDPAIQTYLKHLMVEHENLLSKMKKSSEEARRLQEIK 277
            L+ E +LL  + +  S N+ +  S   +Q  +K L  ++E+L S+++++     +L+E  
Sbjct: 1855 LSEENRLLKRKENEQSENVDDFESGEELQLKIKELNEKNESLSSQLREAISANSQLKEEN 1914

Query: 278  PIVNVLEQRIALYDSIESLKELNKKEGDDSEIKKMIKEE 394
                +LEQRIA  +   S  ++   EG+       +KEE
Sbjct: 1915 ---GILEQRIASLEKEASRSQMTGSEGEVLTENDRLKEE 1950


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 251 EARRLQEIKPIVNVLEQRIALYDSI 325
           E+RR +  K IVN+L++RI L+D I
Sbjct: 168 ESRRTESDKEIVNILKRRIILFDEI 192


>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
 Frame = +2

Query: 89  FLRSFLNSERQLLHFRRHCSHNIMNLSDPAI-QTYLKHLMVEHENLLSKMKKSSEEARRL 265
           F  S+ N  R+  H     SH     S+  + QT +K     +  L S  + S+  A+ L
Sbjct: 479 FEESYSNLNRERSHLDN--SHPPAPFSEEHVYQTLIKFTC--NGELPSPRELSAALAKEL 534

Query: 266 QEI-----KPIVNVLEQRIALYDSIESLKELNKKEGDDS--EIKKMIKE 391
           QE        +  VLE++I + D +ESL++ + K+ +++  ++KK  KE
Sbjct: 535 QEFYVRHENKLKRVLEEKIIVEDDLESLRQEHAKKIEEAYDDLKKTQKE 583


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
 Frame = +2

Query: 215 ENLLSKMKKSSEEAR------RLQEIKPIVNVLEQRIALYDSIESLKELNKK-----EGD 361
           ENLLS +KK     R       L+  K +  VLE+ + L  S+ +++  NK       G 
Sbjct: 483 ENLLSTLKKELHTEREDRTNAELKNHKELNKVLERNMELESSVSAMERKNKALEKSVNGL 542

Query: 362 DSEIKKM 382
           + EIKKM
Sbjct: 543 EKEIKKM 549


>SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
 Frame = +2

Query: 68  MPFPKLLFLRSFLNSERQLLHFRRHCSHNIMNLSDPAIQTYLKHLMV--EHENLLSKMKK 241
           +P  K+  +++ + +E+  L  ++  +    N     ++   K LM   E +N L +  K
Sbjct: 325 IPPEKIAEMKAKIEAEKLQLQEKKDMAEEEKNAVAKELEKREKDLMEAEEEQNKLQERLK 384

Query: 242 SSEEARRLQEIKPIVNVLEQRIALYDSIESLKELNKKEGDDSEIKKMIKEE 394
           + E    +  +  +    EQ + L    ES KEL ++      ++K+IKE+
Sbjct: 385 AVESKIIVGGVNLLEKAKEQELLLE---ESAKELAERRERQENLQKLIKEK 432


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +2

Query: 272 IKPIVNVLEQRIALYDSIESLKELNKKEGDDSEIKKMIKEE 394
           +KP++ V      +   +E +KE+ +K G +  ++K ++E+
Sbjct: 827 VKPLLQVARADEEMKQKVEQMKEIEEKLGKEEALRKELEEK 867


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 555  WYMFKSSFANNIASCPPAPAVSSKSTPPSVNGG 457
            W  +K +F   +    P   +  ++TPP +NGG
Sbjct: 1336 WQEWKDTFLAAVNDYIPTKKIKERNTPPWINGG 1368


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 215  ENLLSKMKKSSEEARRLQEIKPIVNVLEQRIALYDSIESLKELNKKEGDDSEIKK 379
            E+ L ++KKSSEE +   E+     + +Q     +  ESLK    +  ++SE++K
Sbjct: 943  ESQLDELKKSSEEEKERMELSYQRELQDQSEKHANEFESLKVQLCRNLENSELEK 997


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 311 KLSFVLGHLRLVLFPVSV*LLRRIFSFYLA 222
           +L FV+GHLR+  + + V  + R F + LA
Sbjct: 743 RLDFVIGHLRVTCYQIYVSNVGRTFRYLLA 772


>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 732

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +2

Query: 215 ENLLSKMKKSSEEARRL--QEIKPIVNVLEQRIALYDSIESLKELNKKEGDDSEIKKMIK 388
           E L  ++ K+ EE R+   +E++     LEQ     DS++ LKE  +KE  +SE +++ K
Sbjct: 206 ERLAKEVTKTLEELRKTMQKELEDAKVKLEQEKK--DSVKKLKERLEKE-RESEEERLQK 262

Query: 389 EEAAI 403
           E  A+
Sbjct: 263 EHDAV 267


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +2

Query: 137 RHCSHNIMNLSDPAIQTYLKHLMVEHENLLSKMKKSSEEARRLQEIKPIVNVLEQRIALY 316
           R  S ++ + + P   T  +    E  +L      +SE+  + +E+KP+V + +++ +L 
Sbjct: 589 RSASPSVTSAASPG--TVSRRTRSERNSLPESANGTSEDCDKAEEVKPLVPIPDKKPSLE 646

Query: 317 DS-IESLKELNKKE 355
           ++ ++S  +  +KE
Sbjct: 647 ENVVKSFDQAFEKE 660


>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 161 NLSDPAIQTYLKHLMVEHENLLSKMKKSSEEAR-RLQEIKPIVNVLEQRIALYDSIESLK 337
           N+  P++  +     VE    + +MK+  E+   ++ E K  ++ L +++   D  +  +
Sbjct: 635 NIDTPSLFRWRHQARVER---MEEMKREKEKLESKITENKRQLDQLRKQLEQVDLSKKHE 691

Query: 338 ELNKKEGDDSEIKKMIKEEAAIYLK 412
            L K E  + E KK+ KEE   + K
Sbjct: 692 LLKKLEDVEKEQKKLRKEEEDFHKK 716


>SB_11927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 95  RSFLNSERQLLHFRRHCSHNIMNLSDPAIQTYLKHLMVEHENLLSKMKKSSEEA 256
           R+FL   R++ H  RH +H   + S   + +  KH  +  + L  K K  S+EA
Sbjct: 16  RTFLQFARRIYHNYRHAAH---DGSCGLVLSDNKHSQIRRKALSGKTKYKSDEA 66


>SB_4245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 95  RSFLNSERQLLHFRRHCSHNIMNLSDPAIQTYLKHLMVEHENLLSKMKKSSEEA 256
           R+FL   R++ H  RH +H   + S   + +  KH  +  + L  K K  S+EA
Sbjct: 16  RTFLQFARRIYHNYRHAAH---DGSCGLVLSDNKHSQIRRKALSGKTKYKSDEA 66


>SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +2

Query: 92  LRSFLNSERQLLHFRRHCSHNIMNLSDPAIQTYLKHLMVEHENLLSKMKKSSEEA-RRLQ 268
           L   L S  + LHF+   + N+M+  D  +Q      + + + L ++++KS+ +  ++  
Sbjct: 344 LEQELQSTNEKLHFQTETNMNLMSTQD--VQEERVRALEQCQTLQAELQKSNAQCEQQAY 401

Query: 269 EIKPIVNVLEQRIALYDSIESLKELNK 349
            I  I   LE+   + +++    E +K
Sbjct: 402 RIMAITQDLEECKGMVNALNKRNESDK 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,711
Number of Sequences: 59808
Number of extensions: 241731
Number of successful extensions: 782
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)