Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0375
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 36 0.006
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 32 0.071
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 31 0.094
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 31 0.16
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 28 0.87
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 1.2
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 1.2
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 1.5
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 2.0
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 26 3.5
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 4.7
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 4.7
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 26 4.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.1
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 35.5 bits (78), Expect = 0.006
Identities = 26/113 (23%), Positives = 54/113 (47%)
Frame = +1
Query: 106 TSVTLGSRVSTDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTS 285
+S GS S+D + S+ + + S D+ S + ++E+ S SED+ S + S +S
Sbjct: 99 SSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 158
Query: 286 LGCAPVIPTSSQYGLAIVGQDNANNQIGSSVPNSNNTEANDMHVSVTNASAGS 444
+ +SS +DN ++ S + +++E +D S +++ + S
Sbjct: 159 SEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESES 211
Score = 29.9 bits (64), Expect = 0.29
Identities = 23/107 (21%), Positives = 49/107 (45%)
Frame = +1
Query: 124 SRVSTDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTSLGCAPV 303
S S + S+ + + S D+ S + ++E+ S SED+ S + S +S +
Sbjct: 159 SEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDS 218
Query: 304 IPTSSQYGLAIVGQDNANNQIGSSVPNSNNTEANDMHVSVTNASAGS 444
+SS +DN ++ S + +++E +D S +++ + S
Sbjct: 219 SSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESES 265
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 31.9 bits (69), Expect = 0.071
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 277 STSLGCAPVIPTSSQYGLAIVGQDNANNQIGSSVPNSNNTEANDMHVSVT-NASAGSIIN 453
+TS A V S+ A Q NNQ S P SNN++ N ++ N AGS+ N
Sbjct: 7 NTSTEPASVAAVSNGNATASSTQVPENNQSDSFAPPSNNSQQNQQSSTIAPNGGAGSVAN 66
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 31.5 bits (68), Expect = 0.094
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = +1
Query: 187 DISRVTDIENETPSFSEDTFSKDDVFYNASSTSLGCAPVIPTSSQYGLAIVGQDNANNQI 366
D VT +F+ DTF+ D SS V+P S L+ + +N+ I
Sbjct: 7 DFQNVTSAGFADDTFAADTFAADKKSPFESSVFENKTQVLPVDSVSRLSNGARSRSNSNI 66
Query: 367 GSSVPNSNNTEANDMHVS 420
S P++ N D VS
Sbjct: 67 SLSEPHALNDTVEDQPVS 84
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 30.7 bits (66), Expect = 0.16
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 133 STDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKD 255
S D G+DS +++ E D + E E+ +SED +D
Sbjct: 936 SDDEGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEED 976
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 28.3 bits (60), Expect = 0.87
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 175 SHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTSLGCAPVIPTSSQ 321
+HTDD RV D ++ PS+ + + + AS + P++ Q
Sbjct: 121 AHTDDNQRVMDTDDTIPSYYYEPIGICSLGFGASGITSNTDPIVDEIDQ 169
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 1.2
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Frame = +1
Query: 124 SRVSTDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTSLGCAPV 303
S V T+A + S+ L + + + + + S + + + N S+TS + V
Sbjct: 486 SGVLTNAAQGSSGGLSAAAVSGL--IGSFMGSSSNNSNSSNNNSNTSNNNSNTSNNESMV 543
Query: 304 IPTSSQYGLAIV-----GQDNANNQIGSSVPNSNNTEANDMHVSVTNASAGSIINLIGNA 468
SS G+A G +N NN S N+NN+ N+ +++S + + N+
Sbjct: 544 SKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNS 603
Query: 469 KPQEGMKEIQEHVRNERF 522
K+ + N+ +
Sbjct: 604 SSGNSNKQNYNNNNNQNY 621
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 268 NASSTSLGCAPVIPTSSQYGLAIVGQDNANNQIGSSVPNSNNTEANDMHVSVTNASAGSI 447
N+ S SL +P + Q ++ N S PNS+NT N+ + N S+
Sbjct: 328 NSVSRSLQLSPCLTDDEQLSKSLTSFKQVNVTDASLSPNSHNTSDNEQN----NEDYVSV 383
Query: 448 INLIGN 465
+L+G+
Sbjct: 384 SSLVGS 389
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.5 bits (58), Expect = 1.5
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 166 LDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTSLGCAPVIPTSSQYGLAIVGQ 345
L E + S + ++++ S +T+SK F + SL P+ P +Q ++
Sbjct: 94 LQELQSSFCSGIENLQHVEKSARIETYSKLSSFLKIYTPSLPEDPIFPLLNQLCNFLLSD 153
Query: 346 DNANNQIGSSVPNSN-NTEANDM 411
+NN GS P+ NT+AN +
Sbjct: 154 RCSNNSEGS--PDFQLNTQANKL 174
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 127 RVSTDAGEDSADDLDESHTDDISRVTDIENETPSF---SEDTFSKDDVFYNASSTS 285
+++ + +D D E +D + T +E+E+ +ED + V NASSTS
Sbjct: 31 KIAEELPQDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTS 86
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 349 NANNQIGSSVPNSNNTEAND 408
N NN IGSS NS N+ ND
Sbjct: 17 NLNNAIGSSSINSQNSLTND 36
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 145 GEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNA--SSTSLGCAPVIPTSS 318
G DD+ + ++ TD ++E F+ED S + + + S T P +P SS
Sbjct: 88 GSYKNDDVAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSALPPNVPASS 147
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 142 AGEDSADDLDESHTDDIS----RVTDIENETPSFSEDTFSKDDVFYN 270
+G ++ +D+DES +D+S + + E + +D F +D F++
Sbjct: 120 SGPENLEDVDESSAEDVSGDEAEIMNEEGQQIEQKKDAFGLNDGFFD 166
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 100 IITSVTLGSRVSTDAGEDSADDLDESHTDDISRVTDIENETPSFSEDT 243
+ +S +G + D D + E ++ DIENE SFSE +
Sbjct: 49 LTSSENIGKNPERELNSDGTDRIIEEEEEE----DDIENEASSFSEQS 92
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 214 NETPSFSEDTFSKDDVFYNASSTSLG-CAPVIPTSSQYGLAIVGQDNANNQIGSSVPNS 387
N T S++ + FY+ LG PV+ T+ G I+G+ N+ G VP+S
Sbjct: 18 NLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIG-GTRIIGRLTCGNRKGLLVPSS 75
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.1
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +1
Query: 106 TSVTLGSRVSTDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTS 285
+S + S +T + S+ S + S + + + S S + S ++SS+S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 201
Query: 286 LGCAPVIP-TSSQYGLAIVGQDNANNQIGSSVPNSNNTEANDMHVS 420
+ +P TSS ++++ SS P+S+++ M S
Sbjct: 202 SSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSS 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,449
Number of Sequences: 5004
Number of extensions: 48155
Number of successful extensions: 186
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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